Detailed information on CNT30103173


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500730Oryza rufipogonCoffea canephora25.5428.781.05248forward
CNT30616460Oryza rufipogonSesamum indicum42.8428.9980.05416forward
CNT30628927Oryza rufipogonVigna unguiculata32.0355.5480.71311forward
CNT3042435Oryza rufipogonPrunus dulcis30.1842.3481.91293forward
CNT30256659Oryza rufipogonAvena sativa72.1998.0483.02701forward
CNT30468644Oryza rufipogonSaccharum spontaneum74.6777.0581.52725forward
CNT3016767Oryza rufipogonZea mays41.7153.5782.72405forward
CNT30366537Oryza rufipogonSorghum bicolor87.0296.982.13845forward
CNT30154777Oryza rufipogonPrunus persica30.1836.6281.91293forward
CNT30573870Oryza rufipogonVitis vinifera28.0138.5882.35272forward
CNT30121049Oryza rufipogonCitrus clementina28.9425.9782.56281forward
CNT30149986Oryza rufipogonBrachypodium distachyon78.8985.484.86766forward
CNT30584421Oryza rufipogonEchinochloa crusgalli82.799.6382.19803forward
CNT30176441Oryza rufipogonVigna angularis28.0144.9680.15272forward
CNT30551544Oryza rufipogonOryza brachyantha75.59105.6187.74734forward
CNT3049544Oryza rufipogonCucumis sativus34.8142.279.88338forward

Expression of CNT30103173

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSQRWASVLVSCRSPGLQHSLGVEVRWPAAASDH*

>peptide 2 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCKPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

>peptide 3 (88 aa)
MQEMSDCMRVMSDCMRGKWGCKTETLDCMMVMWGCKMVMWGYKMVMWGCMQEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

>peptide 4 (54 aa)
LVKSDCKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 5 (56 aa)
MIWCPRDGRACWCHAEVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRSKLAKHNVL

Sequence

>CNT30103173
ATTTGGTGAAGTCTGACTGTAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA
GTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGG
GTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGTGATGTGGGGCTGTAAGATGGTGATGTGGGGCTATA
AGATGGTGATGTGGGGCTGTATGCAGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAGTGGGA
CTATAACTTGGCGAGGTCGGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGTGAGTATGATGGACTGG
TAGGCGAGTATGACGGACTGGTAGGGGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGG
AGAAGTTGGGCTGTATCCTGGCCCTGGACTGTAAACCGGAGAAGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAG
AAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCAT
GATATGGTGTCCCAGAGATGGGCGAGCGTGCTGGTGTCATGCCGAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGTTCGATGGCCTGCTGCAGCAT
CTGATCATTGAGATACAATGCACAGCCTCCTGTACCGATAGGAGCAAGCTGGCCAAGCATAATGTTCTCAG