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Detailed information on CNT30316008

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 2e-12

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30506120	Corylus avellana	Nicotiana attenuata	37.16	41.54	84.36	243	forward
CNT30710529	Corylus avellana	Glycine max	66.82	77.48	80.55	437	forward
CNT30304911	Corylus avellana	Triticum aestivum	37.92	41.47	82.66	248	forward
CNT30400472	Corylus avellana	Triticum turgidum	37.46	24.57	82.04	245	forward
CNT30591924	Corylus avellana	Musa acuminata	23.24	28.52	84.87	152	forward
CNT30554580	Corylus avellana	Oryza glaberrima	46.79	45	82.03	306	forward
CNT30256659	Corylus avellana	Avena sativa	41.74	38.18	82.42	273	forward
CNT30468525	Corylus avellana	Saccharum spontaneum	38.84	30.13	81.1	254	forward
CNT30141877	Corylus avellana	Lolium perenne	37.46	54.69	82.04	245	forward
CNT3067990	Corylus avellana	Leersia perrieri	26.91	46.19	83.52	176	forward
CNT30688581	Corylus avellana	Triticum urartu	37.92	42.69	82.66	248	forward
CNT30620243	Corylus avellana	Cajanus cajan	35.17	69.28	80.87	230	forward
CNT30150463	Corylus avellana	Brachypodium distachyon	42.51	31.63	80.94	278	forward
CNT30103220	Corylus avellana	Oryza rufipogon	41.74	29.39	82.42	273	forward
CNT30584421	Corylus avellana	Echinochloa crusgalli	41.59	33.75	84.56	272	forward
CNT30498009	Corylus avellana	Digitaria exilis	37.92	25.33	82.66	248	forward
CNT30551544	Corylus avellana	Oryza brachyantha	41.13	38.71	82.9	269	forward

Expression of CNT30316008

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MWGCMRVRLGCMKEKWDCKKVMWGCKMGKWGCMPVMWGCMLAKWGCMLGKWGCNLER*

>peptide 2 (37 aa)
MEKQEKKYPHHWPRQGWNNSAENVIWKCKNDYNQQLA*

Sequence

>CNT30316008
CCTGAAGATAGATCACCATAGTAATGGAAAAACAAGAAAAAAAATATCCACACCACTGGCCAAGACAGGGATGGAACAATTCAGCTGAAAATGTAATATG
GAAATGTAAGAATGACTACAATCAGCAGCTAGCATAGTCAATCACACATTGGTACCACCAAAATGATCAGCAATTAGGACATTTTGCAACATGGTTTACC
TATAATTAGGAGATGTAGGACTATATGGACTTGACGGTGACAATCTTGGACTACTTGGTGAGTATGCCAGTGAAGGGCTGTACTTCGCCGACTGAGGATT
ATAGCTAGGAGATGTTGGACTATAACTGGGTGAGGTAGGGCTGTACGAGGGAGATGTGGGGCTGTATGAGGGTGAGGTTGGGCTGTATGAAGGAGAAGTG
GGACTGTAAGAAGGTGATGTGGGGCTGTAAGATGGGGAAGTGGGGCTGTATGCCGGTGATGTGGGGCTGTATGCTGGCGAAGTGGGGCTGTATGCTGGGG
AAGTGGGGCTGTAACTTGGAGAGGTAGGGCTGTAAGTTGGAGATGTTGGGCTGTAGCTGGGAGAGGTAGGGCTGTAGCTGGGAGAGGTAGGCGAGTAAGA
TGGACTTGTAGGAGAATAGGCAGGACTGGTTGGGCTATAGCCCGGAGAACTAGG