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Detailed information on CNT30468525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316008Saccharum spontaneumCorylus avellana30.1338.8481.1254forward
CNT30516792Saccharum spontaneumJuglans regia36.1834.2781.64305forward
CNT30700558Saccharum spontaneumQuercus lobata15.5448.5287.02131forward
CNT30500730Saccharum spontaneumCoffea canephora33.3332.5280.07281forward
CNT30628927Saccharum spontaneumVigna unguiculata40.8161.4381.4344forward
CNT30710529Saccharum spontaneumGlycine max33.3349.8282.92281forward
CNT30256659Saccharum spontaneumAvena sativa56.766.8586.4478forward
CNT30205103Saccharum spontaneumHelianthus annuus28.3533.7682.85239forward
CNT30625703Saccharum spontaneumDaucus carota36.5428.3981.49308forward
CNT30688581Saccharum spontaneumTriticum urartu50.1872.8185.34423forward
CNT30350933Saccharum spontaneumEragrostis tef70.776.1285.4596forward
CNT30410012Saccharum spontaneumPapaver somniferum28.3562.8980.33239forward
CNT30330867Saccharum spontaneumDioscorea rotundata34.7640.5382.25293forward

Expression of CNT30468525

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CSLEKSDCMESSWGCLESMHVKGCTWLMKDCSLEK*

>peptide 2 (33 aa)
MDCIPLTMESNHLVKGMVRMPCAQHMVRTKHLY*

Sequence

>CNT30468525
CTGTAGCTTGGAGAAGTCTGACTGTATGGAGTCATCCTGGGGCTGCTTGGAGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTTG
GAGAAGTAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAGGTAGGGCTGTATGCAGGTGATGTCGGGCTGTA
TGAGGGAGATGTAGGGCTATATGAGGGGGAAGTAGGACTGTATGATGGGGAGGTAGGGCTGTATGACGGGGATGTAGGGCTGTATGACGGGGATGTTGGG
CTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGATGGCGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGTGAGG
TTGGACTATAAACTGGTGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAACTTGGTGATGTAGGACTGTAGCTAGG
AGATGTTGGGCTGTAACTCGGAGATGTCGGTGAGTATGATGGACTGGTAGGCGAGTAAGTCGGACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAG
GTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGCGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGA
AAACTGGAGAAGATGGACTGTATCCCCCTGACGATGGAGAGTAACCACCTGGTGAAGGGAATGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGA
AGCATCTGTATTAATGGGGGAAGCCCTGATGTTTGGACTCAGC