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Detailed information on CNT3028162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Theobroma cacaoSetaria italica57.5857.1782.04323forward
CNT30640872Theobroma cacaoNymphaea colorata92.6968.6979.23520forward
CNT30536042Theobroma cacaoEucalyptus grandis85.7487.4581.5481forward
CNT30316118Theobroma cacaoCorylus avellana87.768.9182.11492forward
CNT30549101Theobroma cacaoIpomoea triloba39.3937.4681.45221forward
CNT30516792Theobroma cacaoJuglans regia89.6656.5283.1503forward
CNT30700558Theobroma cacaoQuercus lobata48.1310084.07270forward
CNT30376379Theobroma cacaoArabidopsis thaliana91.2768.8282.23512forward
CNT30616511Theobroma cacaoSesamum indicum77.3666.4680.41434forward
CNT30269232Theobroma cacaoChenopodium quinoa88.0677.6779.96494forward
CNT3021333Theobroma cacaoCitrullus lanatus89.384.6381.24501forward
CNT30403782Theobroma cacaoBeta vulgaris51.1668.6682.23287forward
CNT30628784Theobroma cacaoVigna unguiculata88.5965.3179.88497forward
CNT30195835Theobroma cacaoPisum sativum31.3769.2983.52176forward
CNT30708216Theobroma cacaoGlycine max78.0778.3581.28438forward
CNT3042412Theobroma cacaoPrunus dulcis92.3469.9183.2518forward
CNT3091554Theobroma cacaoSolanum tuberosum39.5732.2783.78222forward
CNT30559586Theobroma cacaoActinidia chinensis61.3242.6380.52344forward
CNT3087851Theobroma cacaoVigna radiata78.4348.1480.68440forward
CNT30235097Theobroma cacaoBrassica oleracea97.6868.4178.83548forward
CNT30508904Theobroma cacaoSolanum lycopersicum34.0530.9184.29191forward
CNT30554779Theobroma cacaoOryza glaberrima41.5324.9283.26233forward
CNT30256659Theobroma cacaoAvena sativa39.3930.9181.45221forward
CNT30312432Theobroma cacaoCamelina sativa66.6796.1482.62374forward
CNT30263540Theobroma cacaoBrassica rapa71.4862.1780.3401forward
CNT30468704Theobroma cacaoSaccharum spontaneum49.7322.6583.15279forward
CNT3016767Theobroma cacaoZea mays39.9329.6386.16224forward
CNT30607691Theobroma cacaoGossypium raimondii99.1182.1386.69556forward
CNT3067990Theobroma cacaoLeersia perrieri39.9358.7983.04224forward
CNT30648253Theobroma cacaoRosa chinensis42.635.8382.85239forward
CNT30625502Theobroma cacaoDaucus carota27.0918.6784.87152forward
CNT30688581Theobroma cacaoTriticum urartu48.4846.8280.51272forward
CNT30476914Theobroma cacaoArabidopsis halleri89.1389.2981.2500forward
CNT30366537Theobroma cacaoSorghum bicolor40.4626.0384.14227forward
CNT30620207Theobroma cacaoCajanus cajan60.7815.8781.82341forward
CNT30354836Theobroma cacaoLactuca sativa37.7936.7482.08212forward
CNT30370935Theobroma cacaoOryza glumipatula45.2826.2483.07254forward
CNT30154712Theobroma cacaoPrunus persica95.5468.8183.4536forward
CNT30408809Theobroma cacaoPapaver somniferum72.5547.1180.34407forward
CNT30573870Theobroma cacaoVitis vinifera84.1466.9580.72472forward
CNT30705868Theobroma cacaoPrunus avium93.9449.6281.59527forward
CNT30642027Theobroma cacaoCannabis sativa49.0243.185.09275forward
CNT30330867Theobroma cacaoDioscorea rotundata4131.8182.17230forward
CNT30150463Theobroma cacaoBrachypodium distachyon37.2523.7884.69209forward
CNT30103004Theobroma cacaoOryza rufipogon41.5323.3783.69233forward
CNT30584421Theobroma cacaoEchinochloa crusgalli38.8627.0582.57218forward
CNT30497905Theobroma cacaoDigitaria exilis38.8624.1483.03218forward
CNT30558075Theobroma cacaoPanicum hallii37.7926.8785.85212forward
CNT30551544Theobroma cacaoOryza brachyantha4133.0984.35230forward
CNT30335477Theobroma cacaoCynara cardunculus41.5361.3281.55233forward
CNT3049385Theobroma cacaoCucumis sativus67.247.682.49377forward

Expression of CNT3028162

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWDYNLVRLDCTLEKWGYKLVKLGCKKEM*

>peptide 2 (36 aa)
MMGMLGCMMETWGYMRVKWGCMLVKLGYIRVKWGCS*

Sequence

>CNT3028162
GTGAGTACGCAAGAGATGGACTGTACTTGGCTGACTGTGGATTGTAACTTGGAGAGGTAGGACTATAGCTTGGTGATGTGGGACTATAACTTGGTGAGGT
TGGACTGTACCCTGGAGAAGTGGGGCTATAAGCTGGTGAAGTTGGGCTGTAAGAAGGAGATGTAGGGCTGTATGATGGGGATGTTGGGCTGTATGATGGA
GACGTGGGGCTATATGCGGGTGAAGTGGGGCTGTATGCTGGTGAAGTTGGGCTATATACGGGTGAAGTGGGGCTGTAGCTAGGTGAAGTTGGACTATAGC
TGGGAGATGTGGGACTATAACTTGGTGAAGTGGGACTGTAACTTGGAGATGTAGGGCTGTAGCTCGGTGAGGTCGGAGAATAAGAGGGACTTGTAGGAGA
ATATGCTGGACTTGTTGGACTGTAACCTGGCGAACTAGGACTGTAAGTAGGTGATGTGGGGCTGTACCCAGGAGAGGTGGGACTATACCCAGGAGATGTA
GGACTGTAGCCAGGGGAGGATGGACTGTATCCTGGAGATGATGGGCTGTAACCAGGGGACG