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Detailed information on CNT30652446


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Rosa chinensisOryza sativa24.619.0596.0576forward
CNT30675831Rosa chinensisSetaria viridis25.5714.5596.279forward
CNT30523531Rosa chinensisSetaria italica25.5711.5296.279forward
CNT30533222Rosa chinensisEucalyptus grandis26.2124.9295.0681forward
CNT30318276Rosa chinensisCorylus avellana25.897.7693.7580forward
CNT30549981Rosa chinensisIpomoea triloba25.2416.2294.8778forward
CNT30517219Rosa chinensisJuglans regia26.214.3796.381forward
CNT30701352Rosa chinensisQuercus lobata26.2120.4593.8381forward
CNT30500546Rosa chinensisCoffea canephora25.2416.8598.7278forward
CNT30278460Rosa chinensisChenopodium quinoa26.2113.0295.0681forward
CNT3070099Rosa chinensisQuercus suber26.2114.5493.8381forward
CNT30401878Rosa chinensisBeta vulgaris26.2112.792.5981forward
CNT30526086Rosa chinensisPhaseolus vulgaris26.2115.1793.8381forward
CNT30628518Rosa chinensisVigna unguiculata26.218.0593.8381forward
CNT30199009Rosa chinensisPisum sativum24.614.3194.7476forward
CNT30494259Rosa chinensisOlea europaea25.5715.6794.9479forward
CNT30506885Rosa chinensisNicotiana attenuata26.2114.9496.381forward
CNT30712442Rosa chinensisGlycine max26.214.8393.8381forward
CNT3043428Rosa chinensisPrunus dulcis53.7237.0587.35166forward
CNT30163346Rosa chinensisPistacia vera24.611.4896.0576forward
CNT30638745Rosa chinensisCapsicum annuum26.2115.9192.5981forward
CNT3094527Rosa chinensisSolanum tuberosum26.2115.5295.0681forward
CNT30191267Rosa chinensisSecale cereale25.5723.2494.9479forward
CNT30307634Rosa chinensisTriticum aestivum25.5712.3693.6779forward
CNT30227210Rosa chinensisHordeum vulgare25.5717.5293.6779forward
CNT30399552Rosa chinensisTriticum turgidum25.5712.4293.6779forward
CNT30561111Rosa chinensisActinidia chinensis25.5719.1392.4179forward
CNT3085655Rosa chinensisVigna radiata26.2116.9193.8381forward
CNT30233654Rosa chinensisBrassica oleracea26.2116.8492.5981forward
CNT30172851Rosa chinensisTrifolium pratense24.9212.8194.8177forward
CNT30145007Rosa chinensisMedicago truncatula22.6511.7894.2970forward
CNT30242945Rosa chinensisAvena sativa24.611.4694.7476forward
CNT30313662Rosa chinensisCamelina sativa24.616.5292.1176forward
CNT3073498Rosa chinensisBrassica juncea26.2113.1191.3681forward
CNT30260384Rosa chinensisBrassica rapa26.217.2791.3681forward
CNT30599582Rosa chinensisFraxinus excelsior24.9217.0796.177forward
CNT30447879Rosa chinensisSaccharum spontaneum24.614.7697.3776forward
CNT30132841Rosa chinensisLolium perenne24.614.6294.7476forward
CNT30610456Rosa chinensisGossypium raimondii26.218.7191.3681forward
CNT30217757Rosa chinensisKalanchoe fedtschenkoi24.618.9594.7476forward
CNT3067939Rosa chinensisLeersia perrieri20.7122.2295.3164reverse complement
CNT30207458Rosa chinensisHelianthus annuus26.2114.5710081forward
CNT30127630Rosa chinensisCorymbia citriodora24.61793.4276forward
CNT30713631Rosa chinensisMalus domestica golden29.1317.2494.4490forward
CNT30626608Rosa chinensisDaucus carota24.68.9496.0576forward
CNT30722856Rosa chinensisTriticum spelta25.5718.6893.6779forward
CNT30348900Rosa chinensisEragrostis tef24.616.3896.0576forward
CNT30596688Rosa chinensisOryza meridionalis25.5714.6696.279forward
CNT30355299Rosa chinensisLactuca sativa26.2111.6597.5381forward
CNT30154619Rosa chinensisPrunus persica53.7240.8986.75166forward
CNT30423745Rosa chinensisPapaver somniferum24.615.8393.4276forward
CNT30704989Rosa chinensisPrunus avium26.8610.9193.9883forward
CNT3032717Rosa chinensisTheobroma cacao24.68.793.4276forward
CNT3057178Rosa chinensisAmborella trichopoda24.613.1792.1176reverse complement
CNT3024248Rosa chinensisPopulus trichocarpa26.5425.7193.982forward
CNT30326905Rosa chinensisAsparagus officinalis24.9217.5496.177forward
CNT30120571Rosa chinensisCitrus clementina26.546.8892.6882forward
CNT3038456Rosa chinensisCucumis melo26.8616.693.9883forward
CNT30584684Rosa chinensisEchinochloa crusgalli25.5716.5396.279forward
CNT30499031Rosa chinensisDigitaria exilis24.614.2196.0576forward
CNT30593864Rosa chinensisEragrostis curvula24.613.6296.0576forward
CNT30604511Rosa chinensisOryza punctata25.5715.1696.279forward
CNT30556718Rosa chinensisPanicum hallii24.616.9692.1176forward
CNT30112128Rosa chinensisFicus carica24.9214.0894.8177forward
CNT30725701Rosa chinensisLupinus angustifolius24.924.6792.2177forward
CNT3050740Rosa chinensisCucumis sativus24.9211.6796.177forward

Expression of CNT30652446

Peptides detected in this lncRNA

>peptide 1 (52 aa)
CSPLKSHRLSFSPKFIPEGAQAFRLNRHHEGQVEEEENEEVEEEAPKDEAEI*

>peptide 2 (29 aa)
LLTSKISSSLVLTQVHPRRSTSFPSQPSP*

Sequence

>CNT30652446
TTGCTCACCTCTAAAATCTCATCGTCTCTCGTTCTCACCCAAGTTCATCCCAGAAGGAGCACAAGCTTTCCGTCTCAACCGTCACCATGAGGGCCAAGTG
GAAGAAGAAGAGAATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTGATTGCAGCAGCAGCAGCACCTGTTTCACATGGCGTTT
CTGAGCCTAGGCTTTTGAGTTTTATCGGACTTAGTTGTTTGTTAGGGTTAAAAGCGACTCTCATTTGGGCCATTTCACAAATACATTATGTGCTACTGTT
TGTTGGTTT