Detailed information on CNT30112128


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Ficus caricaOryza sativa10.2420.5196.4356reverse complement
CNT30533222Ficus caricaEucalyptus grandis13.5322.7798.6574forward
CNT30506884Ficus caricaNicotiana attenuata14.0830.9297.477forward
CNT3043839Ficus caricaPrunus dulcis10.0520.7510055forward
CNT30191267Ficus caricaSecale cereale14.0822.6594.8177forward
CNT30467175Ficus caricaSaccharum spontaneum10.9725.6496.6760forward
CNT30609975Ficus caricaGossypium raimondii14.0820.3292.2177forward
CNT30219096Ficus caricaKalanchoe fedtschenkoi12.9820.2394.3771forward
CNT3067939Ficus caricaLeersia perrieri11.3321.5396.7762reverse complement
CNT30652446Ficus caricaRosa chinensis14.0824.9294.8177forward
CNT30154619Ficus caricaPrunus persica15.5420.9496.4785forward

Expression of CNT30112128

Peptides detected in this lncRNA

>peptide 1 (79 aa)
KISPQSPNHKLGFVYKNCNRPHPQPDCHSHRLVQPSKERVTEAELLGFVRGCVTMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (43 aa)
MRALASSSAWRLGLIRFCQFFFFFLGDLVSMFVRIYVENLALF*

Sequence

>CNT30112128
GAAAATCTCACCCCAAAGCCCAAATCACAAACTAGGGTTCGTTTATAAGAACTGCAACCGTCCTCATCCCCAGCCAGACTGCCATTCTCATCGTCTGGTT
CAGCCTTCGAAAGAGAGAGTAACAGAAGCAGAGCTTTTAGGGTTTGTTCGTGGCTGCGTTACCATGAGAGCCAAGTGGAAGAAGAAGCGCATGAGGAGGT
TGAAGAGGAAGCGCAGAAAGATGAGGCAGAGATCTAAATGAGAGCTCTAGCTAGCTCTTCCGCTTGGCGTTTGGGTCTTATCCGTTTCTGTCAATTTTTC
TTTTTCTTTTTGGGCGATCTTGTTTCAATGTTTGTTAGGATTTATGTGGAAAATCTAGCGCTGTTTTAGCTCTGGTGTTTGTCACATTCGCTAGTTGTTT
AAGTTTGAATTCTGCTTTTGTCAAAAACTCAATTTTGCTTATGAATCTGCTAAATTTTGCTTTTTTTTTTTTTTTCCTGTCATAATTTTTGGAATTCGTT
TGGCTTTTGTTATGATTCTGTGATAAATTCACAATTCTCGAAAGGAA