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Detailed information on CNT3070099


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Quercus suberEucalyptus grandis14.7225.2397.5682forward
CNT30317675Quercus suberCorylus avellana14.3629.749580forward
CNT30549577Quercus suberIpomoea triloba1421.7997.4478reverse complement
CNT30514313Quercus suberJuglans regia14.922.1997.5983forward
CNT30701463Quercus suberQuercus lobata44.3447.8794.33247forward
CNT30376000Quercus suberArabidopsis thaliana14.7221.9395.1282forward
CNT30506884Quercus suberNicotiana attenuata13.6430.5298.6876forward
CNT3043839Quercus suberPrunus dulcis20.2942.6488.5113forward
CNT30538793Quercus suberBrassica napus14.921.593.9883forward
CNT30236394Quercus suberBrassica oleracea14.1821.3593.6779forward
CNT30309894Quercus suberCamelina sativa1437.3294.8778forward
CNT3074476Quercus suberBrassica juncea14.7220.9795.1282forward
CNT30261820Quercus suberBrassica rapa14.1825.2493.6779forward
CNT30605418Quercus suberGossypium raimondii15.2630.0494.1285forward
CNT30219096Quercus suberKalanchoe fedtschenkoi1422.2294.8778forward
CNT30652446Quercus suberRosa chinensis14.5426.2193.8381forward
CNT30126894Quercus suberCorymbia citriodora14.3622.169580forward
CNT30429165Quercus suberPapaver somniferum14.7223.193.982forward
CNT30572709Quercus suberVitis vinifera15.0828.3897.6284forward
CNT30704989Quercus suberPrunus avium25.1318.490.71140forward
CNT3024248Quercus suberPopulus trichocarpa14.7225.7197.5682forward
CNT30175528Quercus suberVigna angularis14.5425.9697.5381forward
CNT30725207Quercus suberLupinus angustifolius15.0823.3396.4384forward
CNT30115234Quercus suberEutrema salsugineum15.0820.5992.8684forward

Expression of CNT3070099

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LSPKPSLPYIRVSSVLPINTLNASNLNEPLWKIAFSAALSAQLGF*

Sequence

>CNT3070099
CTTAAGCCCAAAACCTAGCCTACCATACATTAGGGTTTCTTCTGTACTCCCTATAAATACTCTCAACGCCTCTAACCTCAATGAACCTCTCTGGAAAATT
GCTTTCTCGGCAGCCTTGTCTGCACAACTAGGGTTTTGAAGCGAACTTAGCCACCGCATCACCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGT
TGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGATTTATTATTATTATTATTACTATTAAGTCGGTGTCGTTTTGTTTTCTAATCTGATGTT
GATTAGAGTCGTTAGTGTCTTTTTGTTTTCCTATGTTTGGATAAATTTCTACGAAATGGATATTTGTACTGTTTAATGAGATTTTTCGTATTTGACTTTA
ATGTTTTTTATGGTTATAGTTATGTGGAAACTCGTCCTTTTTATCTTTGAATGTCGTTTTGATTAGATGTTTCAAGTTTATTTATATCCTTGAAAACTAC
GATTTGGTTAATTCCAGTTATGCCGGTTGTTAATTTTGTGTTCAAAATGTCTTATTT