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Detailed information on CNT30556718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Panicum halliiOryza sativa18.9723.2298.8285forward
CNT30677986Panicum halliiSetaria viridis59.8285.6286.94268forward
CNT30533222Panicum halliiEucalyptus grandis17.1923.6993.5177forward
CNT30317675Panicum halliiCorylus avellana14.5124.1693.8565forward
CNT30549577Panicum halliiIpomoea triloba18.7523.4692.8684reverse complement
CNT30514313Panicum halliiJuglans regia17.6321.1292.4179forward
CNT30224947Panicum halliiHordeum vulgare19.229.2596.5186forward
CNT30309894Panicum halliiCamelina sativa17.6337.891.1479forward
CNT30467175Panicum halliiSaccharum spontaneum13.8426.595.1662forward
CNT30137004Panicum halliiLolium perenne18.5335.4792.7783forward
CNT30219096Panicum halliiKalanchoe fedtschenkoi18.9724.2295.2985forward
CNT3067939Panicum halliiLeersia perrieri14.7322.9293.9466reverse complement
CNT30652446Panicum halliiRosa chinensis16.9624.692.1176forward
CNT30721717Panicum halliiTriticum spelta20.3116.9595.691forward
CNT30341799Panicum halliiEragrostis tef24.1123.8997.22108forward
CNT30619768Panicum halliiCajanus cajan17.4131.292.3178forward
CNT30704991Panicum halliiPrunus avium18.9727.5191.7685forward
CNT3024248Panicum halliiPopulus trichocarpa17.1924.1492.2177forward
CNT30580802Panicum halliiEchinochloa crusgalli25.4524.1596.49114forward
CNT30499286Panicum halliiDigitaria exilis2526.6796.43112forward
CNT30593653Panicum halliiEragrostis curvula24.1123.6398.15108forward
CNT30175528Panicum halliiVigna angularis16.9624.3692.1176forward
CNT30725207Panicum halliiLupinus angustifolius17.4121.6792.3178forward

Expression of CNT30556718

Peptides detected in this lncRNA

>peptide 1 (78 aa)
ARPAAAAIATLSQPPASPSHWVRARGVAPASELPRRDEGQVEEEADEAAQEEAPKDEAEIQVDLPRPCFGVCSSVAIY*

>peptide 2 (41 aa)
MYLKPLRAACLFCDEYNGHLKFRIWFRDIFQRIIFAWHVCF*

>peptide 3 (37 aa)
SSPSRRCYRNPLSAARFSLPLGESERSRAGERAPPPR*

Sequence

>CNT30556718
GAGCTCGCCCAGCCGCCGCTGCTATCGCAACCCTCTCTCAGCCGCCCGCTTCTCCCTCCCACTGGGTGAGAGCGAGAGGAGTCGCGCCGGCGAGCGAGCT
CCCCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGCGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGATTTGCCTCGT
CCGTGCTTTGGAGTCTGCAGTTCGGTGGCAATTTACTGATCAATTCTAGTTTTCATTAGTATAAGAAGGGGTTGTGTAATGTATCTGAAACCATTGCGAG
CAGCGTGTCTGTTTTGTGATGAATACAATGGTCATCTAAAATTCCGAATATGGTTCCGAGACATTTTTCAGAGAATAATCTTCGCATGGCATGTTTGTTT
TTAGGTTGGTAGCTTGTTGGCTAATCTTTACCTGATTCTCTCTGATTC