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Detailed information on CNT3094527


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Solanum tuberosumEucalyptus grandis15.925.5496.3983forward
CNT30317675Solanum tuberosumCorylus avellana14.5628.2594.7476forward
CNT30514313Solanum tuberosumJuglans regia16.2822.7398.8285forward
CNT30701352Solanum tuberosumQuercus lobata16.2821.4696.4785forward
CNT30376000Solanum tuberosumArabidopsis thaliana15.7121.9393.982forward
CNT3071712Solanum tuberosumQuercus suber16.2821.4196.4785forward
CNT30506884Solanum tuberosumNicotiana attenuata17.6236.9598.9192forward
CNT30638745Solanum tuberosumCapsicum annuum60.1561.6983.76314forward
CNT30191267Solanum tuberosumSecale cereale15.5223.8293.8381forward
CNT30541697Solanum tuberosumBrassica napus16.2821.395.2985forward
CNT3074476Solanum tuberosumBrassica juncea15.921.2393.9883forward
CNT30605418Solanum tuberosumGossypium raimondii16.0929.6895.2484forward
CNT30219096Solanum tuberosumKalanchoe fedtschenkoi15.1322.5193.6779forward
CNT30652446Solanum tuberosumRosa chinensis15.5226.2195.0681forward
CNT30126894Solanum tuberosumCorymbia citriodora15.3322.1696.2580forward
CNT30619768Solanum tuberosumCajanus cajan15.333296.2580forward
CNT30429165Solanum tuberosumPapaver somniferum15.923.3895.1883forward
CNT30572709Solanum tuberosumVitis vinifera15.928.0496.3983forward
CNT30704991Solanum tuberosumPrunus avium15.926.8695.1883forward
CNT3024248Solanum tuberosumPopulus trichocarpa15.7125.7196.3482forward
CNT30175528Solanum tuberosumVigna angularis15.7126.2896.3482forward
CNT30115234Solanum tuberosumEutrema salsugineum15.920.3491.5783forward

Expression of CNT3094527

Peptides detected in this lncRNA

>peptide 1 (51 aa)
YRDWAHFSDDLPQSPLVISTLRVSFYIPPVLTSVLIVQLLFFIGKFTPARQ*

Sequence

>CNT3094527
TACAGAGACTGGGCCCATTTCTCGGATGATTTGCCCCAAAGCCCATTAGTCATATCCACTCTTAGGGTTTCCTTTTATATTCCACCAGTCCTCACTTCCG
TTCTCATCGTGCAGCTTCTCTTCTTCATCGGTAAGTTCACTCCGGCCAGGCAGTAAATAGACTCCCTTCCGTCGTAGCTGATTCACCATGAGAGCCAAGT
GGAAGAAGAAGCGTATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAGAATTGTACTTTGCAGTTCTTAGCTTTTGACATATC
TCCGTCCCTCTAGGTTATTGCGTTTTTGTCTTATTTTCTGTGTTTGCAGTTAAATTTCAGTAGTTACATTGTGCTAATGGCACCTAAACCTAATGTATTT
CTGTTTCTGAGGTGTATTGAAACTCTGGGAGCCATTTTTGGCTCAAGTTTATGATATTTACTCCTTAATTACTGATTCATCTCGATCCGTTTTTTCTTTT
ACCAAATGGCTTATTGGCCTGC