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Detailed information on CNT30533222


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Eucalyptus grandisOryza sativa23.6919.393.5177forward
CNT30675831Eucalyptus grandisSetaria viridis24.9214.9296.381forward
CNT30523531Eucalyptus grandisSetaria italica24.9211.8196.381forward
CNT30318276Eucalyptus grandisCorylus avellana24.927.8698.7781forward
CNT30547713Eucalyptus grandisIpomoea triloba25.549.6796.3983forward
CNT30517219Eucalyptus grandisJuglans regia25.234.4298.7882forward
CNT30701463Eucalyptus grandisQuercus lobata25.2315.8997.5682forward
CNT30376000Eucalyptus grandisArabidopsis thaliana24.9221.6692.5981forward
CNT30500546Eucalyptus grandisCoffea canephora24.3117.0696.279forward
CNT30278460Eucalyptus grandisChenopodium quinoa25.2313.1896.3482forward
CNT3070099Eucalyptus grandisQuercus suber25.2314.7297.5682forward
CNT30404042Eucalyptus grandisBeta vulgaris2416.2597.4478forward
CNT30526086Eucalyptus grandisPhaseolus vulgaris25.5415.5495.1883forward
CNT30628518Eucalyptus grandisVigna unguiculata25.238.1596.3482forward
CNT30194705Eucalyptus grandisPisum sativum2414.1396.1578forward
CNT30494259Eucalyptus grandisOlea europaea24.6215.8798.7580forward
CNT30506885Eucalyptus grandisNicotiana attenuata26.1515.6897.6585forward
CNT30712442Eucalyptus grandisGlycine max25.234.8996.3482forward
CNT3043428Eucalyptus grandisPrunus dulcis2417.4198.7278forward
CNT30163346Eucalyptus grandisPistacia vera23.6911.6397.477forward
CNT30638745Eucalyptus grandisCapsicum annuum25.5416.3196.3983forward
CNT3094527Eucalyptus grandisSolanum tuberosum25.5415.996.3983forward
CNT30191267Eucalyptus grandisSecale cereale24.6223.539580forward
CNT30307634Eucalyptus grandisTriticum aestivum24.6212.5296.2580forward
CNT30227210Eucalyptus grandisHordeum vulgare24.9217.9693.8381forward
CNT30399552Eucalyptus grandisTriticum turgidum24.6212.5896.2580forward
CNT30561111Eucalyptus grandisActinidia chinensis23.3818.496.0576forward
CNT3085655Eucalyptus grandisVigna radiata25.5417.3395.1883forward
CNT30538793Eucalyptus grandisBrassica napus25.8521.7694.0584forward
CNT30233654Eucalyptus grandisBrassica oleracea25.5417.2695.1883forward
CNT30172851Eucalyptus grandisTrifolium pratense2412.9897.4478forward
CNT30145007Eucalyptus grandisMedicago truncatula21.8511.9597.1871forward
CNT30442977Eucalyptus grandisAegilops tauschii20.6214.2997.0167forward
CNT30248711Eucalyptus grandisAvena sativa24.6214.1693.7580forward
CNT30313662Eucalyptus grandisCamelina sativa23.6916.7493.5177forward
CNT3060340Eucalyptus grandisArabidopsis lyrata2415.8592.3178forward
CNT3073498Eucalyptus grandisBrassica juncea25.5413.4393.9883forward
CNT30260384Eucalyptus grandisBrassica rapa25.857.5494.0584forward
CNT30601041Eucalyptus grandisFraxinus excelsior24.6214.3497.580forward
CNT30468162Eucalyptus grandisSaccharum spontaneum24.9211.0797.5381forward
CNT30132841Eucalyptus grandisLolium perenne23.6914.8193.5177forward
CNT3011623Eucalyptus grandisZea mays20.6216.5895.5267reverse complement
CNT30610456Eucalyptus grandisGossypium raimondii25.238.8295.1282forward
CNT30217757Eucalyptus grandisKalanchoe fedtschenkoi23.6919.298.777forward
CNT3067939Eucalyptus grandisLeersia perrieri2022.5796.9265reverse complement
CNT30652446Eucalyptus grandisRosa chinensis24.9226.2195.0681forward
CNT30213082Eucalyptus grandisHelianthus annuus25.5418.4995.1883forward
CNT30126894Eucalyptus grandisCorymbia citriodora94.1584.7690.2306forward
CNT30715353Eucalyptus grandisMalus domestica golden24.926.5998.7781forward
CNT30626608Eucalyptus grandisDaucus carota23.699.0693.5177forward
CNT30722856Eucalyptus grandisTriticum spelta24.6218.9196.2580forward
CNT30348934Eucalyptus grandisEragrostis tef20.623.7998.5167reverse complement
CNT30479698Eucalyptus grandisArabidopsis halleri23.6916.8193.5177forward
CNT30619791Eucalyptus grandisCajanus cajan24.3130.0494.9479forward
CNT30596688Eucalyptus grandisOryza meridionalis24.6214.849580forward
CNT30355299Eucalyptus grandisLactuca sativa25.5411.9495.1883forward
CNT30154619Eucalyptus grandisPrunus persica2419.2198.7278forward
CNT30423745Eucalyptus grandisPapaver somniferum23.6916.0494.8177forward
CNT30572709Eucalyptus grandisVitis vinifera25.2327.797.5682forward
CNT30704989Eucalyptus grandisPrunus avium25.2310.7898.7882forward
CNT3032717Eucalyptus grandisTheobroma cacao23.698.8197.477forward
CNT3057178Eucalyptus grandisAmborella trichopoda23.6913.3494.8177reverse complement
CNT3024248Eucalyptus grandisPopulus trichocarpa25.2325.7197.5682forward
CNT30320568Eucalyptus grandisAsparagus officinalis2412.8393.5978forward
CNT30120214Eucalyptus grandisCitrus clementina25.2315.9896.3482forward
CNT3038456Eucalyptus grandisCucumis melo24.3115.893.6779forward
CNT30584684Eucalyptus grandisEchinochloa crusgalli24.9216.9596.381forward
CNT30499031Eucalyptus grandisDigitaria exilis23.6914.3993.5177forward
CNT30593864Eucalyptus grandisEragrostis curvula23.6913.893.5177forward
CNT30604511Eucalyptus grandisOryza punctata24.6215.3696.2580forward
CNT30174981Eucalyptus grandisVigna angularis25.5416.8796.3983forward
CNT30556718Eucalyptus grandisPanicum hallii23.6917.1993.5177forward
CNT30112128Eucalyptus grandisFicus carica22.7713.5398.6574forward
CNT30723374Eucalyptus grandisLupinus angustifolius24.929.1795.0681forward
CNT3050740Eucalyptus grandisCucumis sativus25.5412.5892.7783forward
CNT30115234Eucalyptus grandisEutrema salsugineum25.2320.192.6882forward

Expression of CNT30533222

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LISTSGHLHGGHREKARVFDGLGAEEHIDLSP*

Sequence

>CNT30533222
CTCATATCGACCTCGGGGCACTTGCACGGTGGCCACCGAGAGAAAGCTAGGGTTTTTGACGGCCTAGGAGCGGAGGAGCACATCGACCTTTCACCATGAG
AGCCAAGTGGAAGAAGAAGCGCATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAAAATCCTCGTTGGGCGGCGATAGGGACG
TTGGAGATTCGGGTTTCGTTGTTGGGTTTTTTGTACTTGGTTTTTTCTTGCATTAAAGTTGAGAACTTTTAAGAATTAGCGTCGGATGTTGAATCTAAAT
ATTTGCTACTATTCTCTGAATCGAA