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Detailed information on CNT30500546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Coffea canephoraEucalyptus grandis17.0624.3196.279forward
CNT30317675Coffea canephoraCorylus avellana13.3923.0596.7762forward
CNT30514313Coffea canephoraJuglans regia17.2821.399580forward
CNT30701352Coffea canephoraQuercus lobata17.2820.29580forward
CNT3071712Coffea canephoraQuercus suber17.2820.159580forward
CNT30506884Coffea canephoraNicotiana attenuata16.6330.9297.477forward
CNT30191267Coffea canephoraSecale cereale17.4923.8293.8381forward
CNT30224947Coffea canephoraHordeum vulgare17.0626.8792.4179forward
CNT30395161Coffea canephoraTriticum turgidum17.0622.1992.4179forward
CNT30538793Coffea canephoraBrassica napus16.8520.2193.5978forward
CNT30144286Coffea canephoraMedicago truncatula15.332095.7771reverse complement
CNT3078045Coffea canephoraBrassica juncea17.7121.8192.6882forward
CNT30137004Coffea canephoraLolium perenne17.0633.7692.4179forward
CNT30217757Coffea canephoraKalanchoe fedtschenkoi17.9320.795.1883forward
CNT3067939Coffea canephoraLeersia perrieri14.4723.2695.5267reverse complement
CNT30652446Coffea canephoraRosa chinensis16.8525.2498.7278forward
CNT30207452Coffea canephoraHelianthus annuus13.3922.2210062forward
CNT30721855Coffea canephoraTriticum spelta17.0620.7992.4179forward
CNT30619768Coffea canephoraCajanus cajan17.9333.292.7783forward
CNT30572709Coffea canephoraVitis vinifera17.4927.3695.0681forward
CNT30704991Coffea canephoraPrunus avium17.2825.899580forward
CNT3024248Coffea canephoraPopulus trichocarpa17.0624.7694.9479forward
CNT30175528Coffea canephoraVigna angularis16.852592.3178forward

Expression of CNT30500546

Peptides detected in this lncRNA

>peptide 1 (42 aa)
APRKSPISTPETLGLLYLALRLLFDGVLKEKSEFRERPCLSP*

Sequence

>CNT30500546
GCACCGCGTAAATCCCCTATAAGTACACCAGAAACCCTAGGGCTTTTGTATCTTGCGCTGCGCCTCTTGTTCGACGGGGTTCTGAAAGAGAAGTCGGAGT
TTAGAGAGCGTCCTTGTTTATCGCCATGAGAGCCAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAG
TAGGAGGAGTACCAGAAGAGTCCTTGTTCTTACGTTTTGTTAGATTCTAGGCTCTGCTTATGCTGTCTCTATCTCGCTTTTTTTGTCCTGTCATATTTTA
GATTTTCCTGTCTCCATTTTGTTGAATTTTGGCTTGCAGACTTTGATTGTAATGATATGAAGTTTCAGTTTCGCTGAATCCACCTGTCTAATGGAAATTT
TTATCTTTTGGAGAAATGTTCATTTTATGTTTAGACTGGTACTTGCCTTCGTCTGAATTCCCC