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Detailed information on CNT30348900


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Eragrostis tefOryza sativa19.6122.8110091forward
CNT30514313Eragrostis tefJuglans regia16.8120.8692.3178forward
CNT30309894Eragrostis tefCamelina sativa16.8137.3291.0378forward
CNT30447879Eragrostis tefSaccharum spontaneum20.6918.6497.9296forward
CNT30137004Eragrostis tefLolium perenne18.7537.1896.5587forward
CNT30219096Eragrostis tefKalanchoe fedtschenkoi18.123.9394.0584forward
CNT30652446Eragrostis tefRosa chinensis16.3824.696.0576forward
CNT30207452Eragrostis tefHelianthus annuus13.3622.2295.1662forward
CNT30722009Eragrostis tefTriticum spelta20.0422.297.8593forward
CNT30579009Eragrostis tefEchinochloa crusgalli30.3930.6595.04141forward
CNT30499031Eragrostis tefDigitaria exilis24.7821.595.65115forward
CNT30593864Eragrostis tefEragrostis curvula10083.1589.44464forward
CNT30175528Eragrostis tefVigna angularis16.3824.3692.1176forward
CNT30725207Eragrostis tefLupinus angustifolius16.8121.6792.3178forward

Expression of CNT30348900

Peptides detected in this lncRNA

>peptide 1 (37 aa)
FAPHPRSINQKSETSPPSIASNPNSKIRRRRKRDREL*

>peptide 2 (72 aa)
LRPPPSLYKSEERDVTAIHRVQPQLKNPPPPQARPRALARAPTPAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30348900
CTTCGCCCCCCACCCTCGCTCTATAAATCAGAAGAGCGAGACGTCACCGCCATCCATCGCGTCCAACCCCAACTCAAAAATCCGCCGCCGCCGCAAGCGA
GACCGAGAGCTCTAGCGCGAGCTCCGACCCCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGAGGAAGCGCCGAAAGAT
GAGGCAGAGATCCAAGTAGGCGCTCATTGACGAAGGCTAGTGCAACCTGCATCAGGTCTCTGGTTTGTCAGGATGATCCCTGATGTGCTTGGCTTGAGCA
GGAGGTGTGAACCTTCCTGGCTTTAGCAATTTTAGCTATTTTAAGAGTCTGGTCATGTTCAAAGACTGGGTTTATGTAATGTGAGGATAATCATGTGTTG
CTTTAATACTGGGAGATCAGTTAAATGAGATTTCTGGTTGCTGAATATAATTGTTTTCTGTGGA