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Detailed information on CNT30494259


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Olea europaeaOryza sativa15.8720.0593.7580forward
CNT30533222Olea europaeaEucalyptus grandis15.8724.6298.7580forward
CNT30317675Olea europaeaCorylus avellana12.924.1698.4665forward
CNT30549577Olea europaeaIpomoea triloba15.4821.7997.4478reverse complement
CNT30514313Olea europaeaJuglans regia16.0721.6697.5381forward
CNT30701352Olea europaeaQuercus lobata16.0720.4595.0681forward
CNT30376000Olea europaeaArabidopsis thaliana16.6722.4692.8684forward
CNT3071712Olea europaeaQuercus suber16.0720.495.0681forward
CNT30506884Olea europaeaNicotiana attenuata14.6829.7298.6574forward
CNT30191267Olea europaeaSecale cereale16.0723.8293.8381forward
CNT30224947Olea europaeaHordeum vulgare15.4826.5393.5978forward
CNT30395161Olea europaeaTriticum turgidum15.4821.9193.5978forward
CNT30538793Olea europaeaBrassica napus15.8720.7393.7580forward
CNT3074476Olea europaeaBrassica juncea16.0720.7292.5981forward
CNT30605418Olea europaeaGossypium raimondii16.0728.6293.8381forward
CNT30219096Olea europaeaKalanchoe fedtschenkoi15.4822.2297.4478forward
CNT30652446Olea europaeaRosa chinensis15.6725.5794.9479forward
CNT30126894Olea europaeaCorymbia citriodora15.8722.1696.2580forward
CNT30721855Olea europaeaTriticum spelta15.4820.5393.5978forward
CNT30619768Olea europaeaCajanus cajan16.0732.495.0681forward
CNT30572709Olea europaeaVitis vinifera16.0727.3697.5381forward
CNT30704991Olea europaeaPrunus avium16.2726.5497.5682forward
CNT3024248Olea europaeaPopulus trichocarpa15.8725.0897.580forward

Expression of CNT30494259

Peptides detected in this lncRNA

>peptide 1 (60 aa)
WSWTGPSSAQCGSALRAQNSFVHGLRLAINRARTLGNVTLFPSRITSRVLKRGIEFYLSP*

>peptide 2 (75 aa)
MISRASITLALLRVSYFHCCFDFVNFNLFQYCGTFWHCICSPSIQSTDSLIILKYHLNLTVILTCFTFLFHCEYYC

>peptide 3 (30 aa)
VELDWTFLCPVRQCPPSPKLFRTWAKVSYK*

Sequence

>CNT30494259
GGTGGAGTTGGACTGGACCTTCCTCTGCCCAGTGCGGCAGTGCCCTCCGAGCCCAAAACTCTTTCGTACATGGGCTAAGGTTAGCTATAAATAGAGCGAG
AACCCTAGGAAATGTCACTTTATTTCCCTCCCGAATTACTTCTAGGGTTCTGAAAAGAGGCATCGAGTTTTATTTATCTCCCTAACCATGAGAGCCAAGT
GGAAGAAGAAGCGGATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTCCTGTCCCATGATTTCCCGAGCGTCGATCACTTT
GGCTCTTTTAAGGGTTTCTTATTTTCATTGTTGTTTTGATTTCGTTAATTTCAATCTGTTTCAGTACTGTGGTACGTTTTGGCACTGCATTTGTAGTCCT
AGTATCCAATCCACGGATAGTTTAATAATTTTGAAATATCATTTGAATTTAACTGTTATATTAACGTGCTTTACTTTTTTATTTCATTGCGAGTATTACT
GTAT