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Detailed information on CNT30191267


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675831Secale cerealeSetaria viridis25.5916.0297.787forward
CNT30523531Secale cerealeSetaria italica25.5912.6897.787forward
CNT30533222Secale cerealeEucalyptus grandis23.5324.629580forward
CNT30318276Secale cerealeCorylus avellana23.827.8696.381forward
CNT30547713Secale cerealeIpomoea triloba23.249.2192.4179forward
CNT30517219Secale cerealeJuglans regia23.824.3796.381forward
CNT30701352Secale cerealeQuercus lobata23.8220.4595.0681forward
CNT30376000Secale cerealeArabidopsis thaliana23.8221.6692.5981forward
CNT30500546Secale cerealeCoffea canephora23.8217.4993.8381forward
CNT30278460Secale cerealeChenopodium quinoa23.8213.0293.8381forward
CNT3072716Secale cerealeQuercus suber23.8216.5695.0681forward
CNT30526086Secale cerealePhaseolus vulgaris23.8215.1792.5981forward
CNT30628539Secale cerealeVigna unguiculata23.2412.9993.6779forward
CNT30194705Secale cerealePisum sativum23.5314.4993.7580forward
CNT30494259Secale cerealeOlea europaea23.8216.0793.8381forward
CNT30506885Secale cerealeNicotiana attenuata23.5314.769580forward
CNT30708369Secale cerealeGlycine max22.9412.9494.8778forward
CNT3043428Secale cerealePrunus dulcis22.9417.4196.1578forward
CNT30163346Secale cerealePistacia vera23.2411.9394.9479forward
CNT30635817Secale cerealeCapsicum annuum23.2414.3493.6779forward
CNT3094527Secale cerealeSolanum tuberosum23.8215.5293.8381forward
CNT30307634Secale cerealeTriticum aestivum58.5331.1494.97199forward
CNT30226789Secale cerealeHordeum vulgare52.0635.0594.35177forward
CNT30399552Secale cerealeTriticum turgidum58.5331.2994.47199forward
CNT30566242Secale cerealeActinidia chinensis22.653.1294.8177forward
CNT3085016Secale cerealeVigna radiata23.2411.2793.6779forward
CNT30541757Secale cerealeBrassica napus23.8213.2192.5981forward
CNT30235682Secale cerealeBrassica oleracea23.2415.4993.6779forward
CNT30172851Secale cerealeTrifolium pratense23.5313.319580forward
CNT30144286Secale cerealeMedicago truncatula20.2919.4495.6569reverse complement
CNT30442977Secale cerealeAegilops tauschii33.2424.0992.92113forward
CNT30256571Secale cerealeAvena sativa43.5324.2295.27148forward
CNT30313662Secale cerealeCamelina sativa22.9416.9693.5978forward
CNT3060340Secale cerealeArabidopsis lyrata23.2416.0692.4179forward
CNT3081183Secale cerealeBrassica juncea23.5315.2193.7580forward
CNT30261673Secale cerealeBrassica rapa23.247.2192.4179forward
CNT30611888Secale cerealeArabis alpina23.2416.1992.4179forward
CNT30601041Secale cerealeFraxinus excelsior23.8214.5292.5981forward
CNT30468162Secale cerealeSaccharum spontaneum25.5911.8996.5587forward
CNT3013205Secale cerealeZea mays23.538.8392.580forward
CNT30610306Secale cerealeGossypium raimondii23.539.4392.580forward
CNT30216203Secale cerealeKalanchoe fedtschenkoi20.2916.0898.5569forward
CNT3067939Secale cerealeLeersia perrieri2023.6198.5368reverse complement
CNT30652446Secale cerealeRosa chinensis23.2425.5794.9479forward
CNT30207458Secale cerealeHelianthus annuus23.5314.399580forward
CNT30127630Secale cerealeCorymbia citriodora22.9417.4594.8778forward
CNT30716113Secale cerealeMalus domestica golden23.2413.7497.4779forward
CNT30723054Secale cerealeTriticum spelta58.5340.0494.97199forward
CNT30348934Secale cerealeEragrostis tef21.184.0797.2272reverse complement
CNT30619768Secale cerealeCajanus cajan23.533292.580forward
CNT30596688Secale cerealeOryza meridionalis2515.7797.6585forward
CNT30355299Secale cerealeLactuca sativa23.5311.5192.580forward
CNT30154619Secale cerealePrunus persica22.9419.2196.1578forward
CNT30574365Secale cerealeVitis vinifera23.5313.569580forward
CNT30704989Secale cerealePrunus avium23.8210.6493.8381forward
CNT30642554Secale cerealeCannabis sativa23.8214.0492.5981forward
CNT3032717Secale cerealeTheobroma cacao23.249.0496.279forward
CNT3057178Secale cerealeAmborella trichopoda22.9413.5294.8778reverse complement
CNT3024261Secale cerealePopulus trichocarpa23.829.8992.5981forward
CNT30324349Secale cerealeAsparagus officinalis23.2416.5394.9479forward
CNT30118123Secale cerealeCitrus clementina23.2414.0393.6779forward
CNT30584684Secale cerealeEchinochloa crusgalli25.5918.297.787forward
CNT30499031Secale cerealeDigitaria exilis23.5314.9593.7580forward
CNT30593864Secale cerealeEragrostis curvula23.5314.3493.7580forward
CNT30604511Secale cerealeOryza punctata24.7116.1298.8184forward
CNT30175235Secale cerealeVigna angularis23.2412.593.6779forward
CNT30112128Secale cerealeFicus carica22.6514.0894.8177forward
CNT30725701Secale cerealeLupinus angustifolius23.244.7993.6779forward
CNT30115058Secale cerealeEutrema salsugineum22.9417.6193.5978forward

Expression of CNT30191267

Peptides detected in this lncRNA

>peptide 1 (86 aa)
EQLTSPGPYSGSYFPRVSLLVTPQCASLSPTSPTPHHKTAAAAGEGGEAAGARRRSREEATDHEGQVEEEAHEEAEEEAPKDEAAI*

Sequence

>CNT30191267
GAGCAGCTAACAAGCCCAGGCCCATATTCTGGAAGCTACTTTCCTAGGGTTTCGCTTCTTGTAACCCCCCAGTGCGCCTCCCTTTCCCCCACTTCCCCCA
CTCCCCACCACAAGACCGCCGCCGCCGCAGGAGAAGGAGGAGAAGCAGCAGGCGCGAGAAGGAGATCTCGGGAGGAGGCGACCGACCATGAGGGCCAAGT
GGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCTAAGTAGGCTGGTAGAGGTGGTGGTGATGGCGTGCTGTAGCT
AGCTATGTGTTGTCTTCGGCTATACAGGGTGTGACTCTCG