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Detailed information on CNT30499031


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Digitaria exilisOryza sativa17.0122.8197.891forward
CNT30678059Digitaria exilisSetaria viridis95.794.6481.25512forward
CNT30533222Digitaria exilisEucalyptus grandis14.3923.6993.5177forward
CNT30317675Digitaria exilisCorylus avellana12.1524.1693.8565forward
CNT30191267Digitaria exilisSecale cereale14.9523.5393.7580forward
CNT30224947Digitaria exilisHordeum vulgare17.0130.9596.791forward
CNT30309894Digitaria exilisCamelina sativa14.5837.3291.0378forward
CNT30447879Digitaria exilisSaccharum spontaneum21.3122.1494.74114forward
CNT30135839Digitaria exilisLolium perenne16.2636.7196.5587forward
CNT30219096Digitaria exilisKalanchoe fedtschenkoi15.723.9394.0584forward
CNT3067939Digitaria exilisLeersia perrieri12.923.9694.269reverse complement
CNT30652446Digitaria exilisRosa chinensis14.2124.696.0576forward
CNT30207452Digitaria exilisHelianthus annuus11.5922.2295.1662forward
CNT30722009Digitaria exilisTriticum spelta17.0121.7296.791forward
CNT30348900Digitaria exilisEragrostis tef21.524.7895.65115forward
CNT30619768Digitaria exilisCajanus cajan14.5831.292.3178forward
CNT30572709Digitaria exilisVitis vinifera15.1427.3692.5981forward
CNT3024248Digitaria exilisPopulus trichocarpa14.3924.1492.2177forward
CNT30579574Digitaria exilisEchinochloa crusgalli27.4829.793.2147forward
CNT30175528Digitaria exilisVigna angularis14.2124.3692.1176forward

Expression of CNT30499031

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MQFNEISGTQKYSYCFSVALLIINLHNAL

>peptide 2 (56 aa)
PSRLGFSLSPAPYLYKSEPRANAANIPHRPQIAYPQPPSKRDRELARARAPPPPPR*

Sequence

>CNT30499031
GCCATCTCGACTAGGGTTTTCGCTTTCCCCTGCACCCTACCTCTATAAATCAGAACCGAGAGCCAACGCCGCCAATATCCCTCACCGCCCCCAAATCGCC
TACCCGCAGCCGCCGTCGAAGAGAGACCGGGAGCTCGCTCGAGCTCGAGCTCCGCCCCCTCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGAATGAG
GAGGCTTAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGCGCCCTTGGATGAGGAAGGGAATCGACGCATGCATTCCAGCGTAGGCTTGTTG
GGTTGAGCACCATGAGCTTCGGTGTAGATGTAGGAGTTGTGAACCTTCGTTAGTTTAATTTTGAGCTCTTCAAGGCTCTGGTCATGTTCTAAGGTTGGGT
TTTATGTAATATGAGGATAATCATGTGTTGCTTTGTGACTGAGGTTTATGCAGTTCAATGAGATTTCTGGTACCCAGAAATATAGTTACTGCTTTTCTGT
TGCTCTCTTGATTATTAACTTACATAACGCATTGT