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Detailed information on CNT30227210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Hordeum vulgareOryza sativa13.0821.6196.6159reverse complement
CNT30533222Hordeum vulgareEucalyptus grandis17.9624.9293.8381forward
CNT30701352Hordeum vulgareQuercus lobata17.7420.293.7580forward
CNT3071712Hordeum vulgareQuercus suber17.7420.1593.7580forward
CNT30506884Hordeum vulgareNicotiana attenuata17.2931.3393.5978forward
CNT30442977Hordeum vulgareAegilops tauschii62.9760.5590.85284forward
CNT3074476Hordeum vulgareBrassica juncea17.7420.4691.2580forward
CNT30467175Hordeum vulgareSaccharum spontaneum13.325.6496.6760forward
CNT3067939Hordeum vulgareLeersia perrieri14.4122.5796.9265reverse complement
CNT30652446Hordeum vulgareRosa chinensis17.5225.5793.6779forward
CNT30126894Hordeum vulgareCorymbia citriodora17.9622.4491.3681forward
CNT30704991Hordeum vulgarePrunus avium17.7425.8992.580forward
CNT3024248Hordeum vulgarePopulus trichocarpa17.7425.0893.7580forward

Expression of CNT30227210

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAPFIPSVNSLIPETCTLVGLLSLLLVVSGVLLS*

>peptide 2 (36 aa)
MTNLWNRMNTVLELYLLLIFGHRVFLALVYVFVLLV*

>peptide 3 (40 aa)
RKWGGARRRSREGSTDHEGQVEEEAHEEAEKEAPKDEAAI*

>peptide 4 (40 aa)
MEPYEHCFGALFAANIWPSSISCVGLCLRFACISITVWMLY

>peptide 5 (41 aa)
GSGEAREGDLARGRPTMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30227210
GAGGAAGTGGGGAGGCGCGAGAAGGAGATCTCGCGAGGGGTCGACCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAAAGGAAGCG
CCGAAAGATGAGGCAGCGATCTAAGTAAGCTGATTGAGGTGGTGGTGATGGTGTGCTGTAGCTAGCTATGTTTGTCTTTGGCTGCGGCTGACTGCGGATA
TACTTTCTTGGCACGATGGCACCATTCATCCCATCTGTCAACTCGCTTATTCCAGAAACCTGCACTTTAGTAGGCCTGTTATCGTTGCTTTTAGTTGTAT
CAGGAGTTTTGCTATCATGACCAATCTATGGAACCGTATGAACACTGTTTTGGAGCTTTATTTGCTGCTAATATTTGGCCATCGAGTATTTCTTGCGTTG
GTTTATGTCTTCGTTTTGCTTGTATAAGCATTACTGTCTGGATGCTCTACT