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Detailed information on CNT30355299


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Lactuca sativaOryza sativa11.3721.5891.1479forward
CNT30533222Lactuca sativaEucalyptus grandis11.9425.5495.1883forward
CNT30317675Lactuca sativaCorylus avellana11.0828.6292.2177forward
CNT30549577Lactuca sativaIpomoea triloba11.0821.5193.5177reverse complement
CNT30514313Lactuca sativaJuglans regia11.821.9396.3482forward
CNT30701352Lactuca sativaQuercus lobata11.9420.9693.9883forward
CNT30376000Lactuca sativaArabidopsis thaliana11.6521.6691.3681forward
CNT3071712Lactuca sativaQuercus suber11.9420.9193.9883forward
CNT30506884Lactuca sativaNicotiana attenuata11.5132.1396.2580forward
CNT30191267Lactuca sativaSecale cereale11.5123.5392.580forward
CNT30395161Lactuca sativaTriticum turgidum11.0821.6390.9177forward
CNT30538793Lactuca sativaBrassica napus11.821.2493.982forward
CNT3074476Lactuca sativaBrassica juncea11.6520.7291.3681forward
CNT30605418Lactuca sativaGossypium raimondii11.9429.3392.7783forward
CNT30219096Lactuca sativaKalanchoe fedtschenkoi11.0821.9492.2177forward
CNT30652446Lactuca sativaRosa chinensis11.6526.2197.5381forward
CNT30207452Lactuca sativaHelianthus annuus9.2122.9498.4464forward
CNT30126894Lactuca sativaCorymbia citriodora11.6522.4495.0681forward
CNT30619791Lactuca sativaCajanus cajan11.3730.0493.6779forward
CNT30429165Lactuca sativaPapaver somniferum11.6522.8292.5981forward
CNT30572709Lactuca sativaVitis vinifera12.3729.0594.1986forward
CNT30704991Lactuca sativaPrunus avium11.826.5493.982forward
CNT3024248Lactuca sativaPopulus trichocarpa11.825.7193.982forward
CNT30175528Lactuca sativaVigna angularis11.6525.9693.8381forward

Expression of CNT30355299

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFVWNNNLPDFLKESSPSYKESIAKLTHKTT*

Sequence

>CNT30355299
CTTTTATGTAAATTGTTTAACCCCAGAGATTGCAAACCCGGATCCATTGGGCCGTCCATTAAGATTTAGGGTTCGCTAAATAGCCCCACCCCATCCCCTT
TCTTTCATTATACCGTCGGCTAGGGTTTTATAACTGAAAAAGGAAAAACACAACAAACCCAAGCTATCCGATCACCATGAGAGCCAAGTGGAAGAAGAAG
AGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAATAATATGTTTGTTTGGAATAATAATCTGCCAGACTTTTTGAAGGAA
TCATCACCATCGTATAAGGAGTCGATTGCAAAGCTTACTCACAAGACAACCTAGCCATGTTCAATAATATTTGTAAGTTCTGAATGTGTATGATCCAACT
TTTCTTCTTTGTGAGGCTAAAGGCAGCAGTAGAATTTCTATCACGGGGTCTGTAACATTTCTAACACCCTAGTAACTAGGGATGAGCTTTGGAACCGGAA
CCGGTTTTCCTATATTATAAGAACCGGGAACCGGACCGCCGGTTCTAGCGCCTGTTTCGGTTCCGGTTCCGGTTTTTCGGTTATTTTCAAAATAGAACCG
GTTGAAATACTATAGATTATATGTTATCTTCTAGAACTTGTAAATGATTCAATATTTAACCAAATTATGACTTTTACATTCTAAATTGAAGTACA