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Detailed information on CNT30523531


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Setaria italicaOryza sativa8.621.6110059reverse complement
CNT30675831Setaria italicaSetaria viridis79.1510099.82543forward
CNT30533222Setaria italicaEucalyptus grandis11.8124.9296.381forward
CNT30317675Setaria italicaCorylus avellana9.0423.0596.7762forward
CNT30549577Setaria italicaIpomoea triloba11.2221.5193.5177reverse complement
CNT30514313Setaria italicaJuglans regia11.6621.3993.7580forward
CNT30701352Setaria italicaQuercus lobata11.6620.296.2580forward
CNT3071712Setaria italicaQuercus suber11.6620.1596.2580forward
CNT30506884Setaria italicaNicotiana attenuata11.3731.3396.1578forward
CNT30191267Setaria italicaSecale cereale12.6825.5997.787forward
CNT30224947Setaria italicaHordeum vulgare11.2226.1993.5177forward
CNT30395161Setaria italicaTriticum turgidum11.2221.6393.5177forward
CNT30541697Setaria italicaBrassica napus11.6620.0592.580forward
CNT30467753Setaria italicaSaccharum spontaneum72.1664.6286.26495forward
CNT3011623Setaria italicaZea mays12.9722.0392.1389reverse complement
CNT30219096Setaria italicaKalanchoe fedtschenkoi11.2221.9494.8177forward
CNT3067939Setaria italicaLeersia perrieri9.4822.5710065reverse complement
CNT30652446Setaria italicaRosa chinensis11.5225.5796.279forward
CNT30126894Setaria italicaCorymbia citriodora11.8122.4493.8381forward
CNT30722856Setaria italicaTriticum spelta13.2721.5196.791forward
CNT30348933Setaria italicaEragrostis tef13.4124.3495.6592forward
CNT30619791Setaria italicaCajanus cajan11.5230.0493.6779forward
CNT30429165Setaria italicaPapaver somniferum11.6622.5492.580forward
CNT30572709Setaria italicaVitis vinifera11.6627.0393.7580forward
CNT30704991Setaria italicaPrunus avium11.6625.899580forward
CNT3024248Setaria italicaPopulus trichocarpa11.6625.0893.7580forward
CNT30584684Setaria italicaEchinochloa crusgalli58.684.193.78402forward
CNT30604511Setaria italicaOryza punctata18.2223.9996125forward
CNT30175528Setaria italicaVigna angularis11.5225.3293.6779forward
CNT30725207Setaria italicaLupinus angustifolius11.3721.6793.5978forward

Expression of CNT30523531

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MELCLLLISTSLLSNSCVGSFCVSTGIGI*

Sequence

>CNT30523531
CGGCCCACCTAAGGCCCAAGCCCACGTCCTCGAAGCCGCCTGATCACTCCTAGGGTTCCGCTTCCCTCCCCACCTATATATACCATCAGCCGCCGCCGTC
TCCCATTCCCCTCTCCCCATCGCAACCCCGCCGCCGACGCCGCAGGAGGAGACGCGCCGAGGAGAGACCGCGAGGAGGCGACCATGAGGGCCAAGTGGAA
GAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAAGCTGATGGAGATGGATGGTGGTGGTAATGGCATGCTTGT
ATGCATATCTTCAGATGCGATAGCCTCATGGAGAGATGTCTCCTAGCCATGGTGTTGCTGCTCATCGTCTGTTGAATGGCTTGTCTTGGAAACCTGCGCT
TCAGTAGGCCTGTTATCGTTGTTCTAGTTATATCGAGAGTTTTGCACTGAGACAAATCTGTCGTTTTGTGGACCTGTTATGGAGCTTTGTTTGCTGCTAA
TATCTACCAGCCTATTAAGTAATTCCTGTGTTGGTTCATTTTGTGTTTCAACTGGCATCGGTATTTGAATGGTTCTCTGCTGCTGCTGGCTGAAGCTTCG
TGGTTGATAGCTATGTCCCATGTGGCTTGAAGTCATTGCAAGAGACGCTTCAGCATGCCCCAGTTTTGTGGTGTGTTTGCCTTGTG