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Detailed information on CNT30313662


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Camelina sativaEucalyptus grandis16.7423.6993.5177forward
CNT30317675Camelina sativaCorylus avellana14.1324.1695.3865forward
CNT30549577Camelina sativaIpomoea triloba17.3922.3593.7580reverse complement
CNT30514313Camelina sativaJuglans regia17.1721.1293.6779forward
CNT3094050Camelina sativaSolanum tuberosum17.3920.059580forward
CNT30191267Camelina sativaSecale cereale16.9622.9493.5978forward
CNT30652446Camelina sativaRosa chinensis16.5224.692.1176forward
CNT30572709Camelina sativaVitis vinifera16.9626.3593.5978forward
CNT30704991Camelina sativaPrunus avium16.9625.2494.8778forward
CNT3024248Camelina sativaPopulus trichocarpa16.7424.1493.5177forward
CNT30175528Camelina sativaVigna angularis16.5224.3696.0576forward
CNT30725207Camelina sativaLupinus angustifolius16.9621.6793.5978forward

Expression of CNT30313662

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYVKLALFSLFSKYISSQILLISESNIFSHNV

>peptide 2 (29 aa)
VSPLVKCKTLAIKTLDGSLVKKKSFLSSL*

Sequence

>CNT30313662
GTAAGCCCATTAGTAAAGTGTAAAACCCTAGCTATAAAAACCCTAGATGGCTCTCTTGTGAAAAAAAAATCATTTCTCTCTTCGTTGTAGAGAAATCGGC
GACGAATCTGAAACTCAGAGCAACAACTAAGACTCAACAACAATGAGGGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGTCGAAAGA
TGAGACAGCGATCCAAGTAGACCCACACACCCAAGTTTCCGCTCCCCTCCTCCCCCCCCAATAAATCTCTCAGCCGCTCTCAGTGATTCTGTTTACTTTT
AGTTTTGTTTTCTTGAGACTTTTTTTTCTTCTTTTAATATATCTGAGTTTGAACATTCTGTGATGTATGTAAAACTTGCTTTGTTCTCTCTTTTTTCAAA
ATATATATCGTCACAGATACTCCTTATCTCTGAATCTAATATATTCTCTCATAATGTGTC