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Detailed information on CNT30722856


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675831Triticum speltaSetaria viridis21.5116.7696.791forward
CNT30523531Triticum speltaSetaria italica21.5113.2796.791forward
CNT30533222Triticum speltaEucalyptus grandis18.9124.6296.2580forward
CNT30549577Triticum speltaIpomoea triloba18.4421.7993.5978reverse complement
CNT30514313Triticum speltaJuglans regia19.1521.6693.8381forward
CNT30701352Triticum speltaQuercus lobata19.1520.4593.8381forward
CNT30376000Triticum speltaArabidopsis thaliana19.1521.6693.8381forward
CNT3071712Triticum speltaQuercus suber19.1520.493.8381forward
CNT30506884Triticum speltaNicotiana attenuata17.4929.7294.5974forward
CNT30306711Triticum speltaTriticum aestivum90.3160.3599.74382forward
CNT30399552Triticum speltaTriticum turgidum90.3160.0699.74382forward
CNT30309894Triticum speltaCamelina sativa18.4437.3293.5978forward
CNT30468162Triticum speltaSaccharum spontaneum21.5112.4397.891forward
CNT3067939Triticum speltaLeersia perrieri16.0823.6197.0668reverse complement
CNT30652446Triticum speltaRosa chinensis18.6825.5793.6779forward
CNT30126894Triticum speltaCorymbia citriodora18.9122.1693.7580forward
CNT30619768Triticum speltaCajanus cajan18.913293.7580forward
CNT30596688Triticum speltaOryza meridionalis20.0915.7796.4785forward
CNT30572709Triticum speltaVitis vinifera19.6228.0493.9883forward
CNT30704991Triticum speltaPrunus avium19.1526.2195.0681forward
CNT3024248Triticum speltaPopulus trichocarpa18.9125.0893.7580forward
CNT30584684Triticum speltaEchinochloa crusgalli20.5718.296.5587forward
CNT30175528Triticum speltaVigna angularis18.6825.3293.6779forward
CNT30725207Triticum speltaLupinus angustifolius18.6821.9493.6779forward

Expression of CNT30722856

SRR9114152: 542.55 RPKM

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MYLLGMAAPFISSVNSFIPETCTLVGLLSLLLVVPGVLLS*

>peptide 2 (41 aa)
PQCAPLSPTTPHSLPQDRGRRRRRRRSSRREKEITRAGDRP*

>peptide 3 (44 aa)
MAVVMACCSLLCVSLAAADCGCTCLAWRRHSSHLSTRLFQKPAL*

>peptide 4 (66 aa)
PPVRPPFSHYPPLPTTRPRPPQEEEEKQQAREGDHASRRPTMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 5 (67 aa)
PSAPPFLPLPPTPYHKTAAAAGGGGEAAGARRRSREQATDHEGQVEEEAHEEAEEEAPKDEAAIQVG*

Sequence

>CNT30722856
CCCCCAGTGCGCCCCCCTTTCTCCCACTACCCCCCACTCCCTACCACAAGACCGCGGCCGCCGCAGGAGGAGGAGGAGAAGCAGCAGGCGCGAGAAGGAG
ATCACGCGAGCAGGCGACCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTA
GGCTGATGGCGGTGGTGATGGCGTGCTGTAGCTTGCTATGTGTGTCTTTGGCTGCGGCTGACTGCGGATGTACTTGCTTGGCATGGCGGCGCCATTCATC
TCATCTGTCAACTCGTTTATTCCAGAAACCTGCACTTTAGTAGGCCTGTTATCGTTGCTTTTAGTTGTACCAGGAGTTCTGCTATCATGACCGATCTACC
GAACCGTATGAACTCTGTTTTGG