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Detailed information on CNT30584684


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Echinochloa crusgalliOryza sativa12.3421.6110059reverse complement
CNT30675831Echinochloa crusgalliSetaria viridis80.3370.7293.49384forward
CNT30523531Echinochloa crusgalliSetaria italica80.7556.2793.52386forward
CNT30533222Echinochloa crusgalliEucalyptus grandis16.9524.9296.381forward
CNT30317675Echinochloa crusgalliCorylus avellana12.9723.0596.7762forward
CNT30514313Echinochloa crusgalliJuglans regia16.7421.3993.7580forward
CNT30701352Echinochloa crusgalliQuercus lobata16.7420.296.2580forward
CNT3071712Echinochloa crusgalliQuercus suber16.7420.1596.2580forward
CNT30506884Echinochloa crusgalliNicotiana attenuata16.3231.3396.1578forward
CNT30191267Echinochloa crusgalliSecale cereale18.225.5997.787forward
CNT30541697Echinochloa crusgalliBrassica napus16.7420.0592.580forward
CNT30468162Echinochloa crusgalliSaccharum spontaneum83.2654.3785.68398forward
CNT3011623Echinochloa crusgalliZea mays18.6222.0391.0189reverse complement
CNT3067939Echinochloa crusgalliLeersia perrieri13.622.5710065reverse complement
CNT30652446Echinochloa crusgalliRosa chinensis16.5325.5796.279forward
CNT30126894Echinochloa crusgalliCorymbia citriodora16.9522.4493.8381forward
CNT30722856Echinochloa crusgalliTriticum spelta18.220.5796.5587forward
CNT30348934Echinochloa crusgalliEragrostis tef20.715.5996.9799reverse complement
CNT30619791Echinochloa crusgalliCajanus cajan16.5330.0493.6779forward
CNT30429165Echinochloa crusgalliPapaver somniferum16.7422.5492.580forward
CNT30572709Echinochloa crusgalliVitis vinifera16.7427.0393.7580forward
CNT30704991Echinochloa crusgalliPrunus avium16.7425.899580forward
CNT3024248Echinochloa crusgalliPopulus trichocarpa16.7425.0893.7580forward
CNT30604511Echinochloa crusgalliOryza punctata23.0121.1196.36110forward
CNT30175528Echinochloa crusgalliVigna angularis16.5325.3293.6779forward
CNT30725207Echinochloa crusgalliLupinus angustifolius16.3221.6793.5978forward

Expression of CNT30584684

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDGGGDGMLGCVSLDGDSLMERCLLGTVSPIIVC*

>peptide 2 (37 aa)
FSRRLPHSPLPIATPPPPPPPTPQEETRQGDPARRRP*

>peptide 3 (60 aa)
SAAAFLIPLSPLQPRRRRRRRRRRRRRAKETPRGGDHEGQVEEEAHEEAEEEAPKDEAEI*

>peptide 4 (61 aa)
QPPPSSFPSPHCNPAAAAAADAAGGDAPRRPREEATMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30584684
TTCAGCCGCCGCCTTCCTCATTCCCCTCTCCCCATTGCAACCCCGCCGCCGCCGCCGCCGCCGACGCCGCAGGAGGAGACGCGCCAAGGAGACCCCGCGA
GGAGGCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAAGCTGCTGGAGAT
GGATGGTGGTGGTGATGGCATGCTCGGATGCGTTTCTTTGGATGGCGATAGCCTCATGGAGAGATGTCTGCTAGGCACGGTGTCACCGATCATCGTCTGT
TGAATGGCTTGTCTTCGAAACCTGCACTTCAGTAGGCCTGTTATCGTTGTTCTAGTTATATCAAGAGTTTTGCACTGAGACAAATCAGTCGTTTTGTGGA
CCTGTTATGGAGCTTTGTTTGCTGCTAATATCTACCTACCTATTAAGTAATTCCTGAGCTGTTATTTTCCGATTTTCT