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Detailed information on CNT30675831


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Setaria viridisOryza sativa10.8721.6110059reverse complement
CNT30523531Setaria viridisSetaria italica10079.1599.82543forward
CNT30533222Setaria viridisEucalyptus grandis14.9224.9296.381forward
CNT30317675Setaria viridisCorylus avellana11.4223.0596.7762forward
CNT30549577Setaria viridisIpomoea triloba14.1821.5193.5177reverse complement
CNT30514313Setaria viridisJuglans regia14.7321.3993.7580forward
CNT30701352Setaria viridisQuercus lobata14.7320.296.2580forward
CNT3071712Setaria viridisQuercus suber14.7320.1596.2580forward
CNT30506884Setaria viridisNicotiana attenuata14.3631.3396.1578forward
CNT30191267Setaria viridisSecale cereale16.0225.5997.787forward
CNT30541697Setaria viridisBrassica napus14.7320.0592.580forward
CNT30467753Setaria viridisSaccharum spontaneum87.2961.8885.44474forward
CNT3011623Setaria viridisZea mays16.3922.0392.1389reverse complement
CNT30219096Setaria viridisKalanchoe fedtschenkoi14.1821.9494.8177forward
CNT3067939Setaria viridisLeersia perrieri11.9722.5710065reverse complement
CNT30652446Setaria viridisRosa chinensis14.5525.5796.279forward
CNT30126894Setaria viridisCorymbia citriodora14.9222.4493.8381forward
CNT30722856Setaria viridisTriticum spelta16.7621.5196.791forward
CNT30348933Setaria viridisEragrostis tef16.9424.3495.6592forward
CNT30619791Setaria viridisCajanus cajan14.5530.0493.6779forward
CNT30429165Setaria viridisPapaver somniferum14.7322.5492.580forward
CNT30572709Setaria viridisVitis vinifera14.7327.0393.7580forward
CNT30704991Setaria viridisPrunus avium14.7325.899580forward
CNT3024248Setaria viridisPopulus trichocarpa14.7325.0893.7580forward
CNT30584684Setaria viridisEchinochloa crusgalli73.6683.6893.75400forward
CNT30604511Setaria viridisOryza punctata23.0223.9996125forward
CNT30175528Setaria viridisVigna angularis14.5525.3293.6779forward
CNT30725207Setaria viridisLupinus angustifolius14.3621.6793.5978forward

Expression of CNT30675831

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PIYTISRRRLPFPSPHRNPAADAAGGDAPRRDREEATMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (61 aa)
TYIYHQPPPSPIPLSPSQPRRRRRRRRRAEERPRGGDHEGQVEEEAHEEAEEEAPKDEAEI*

>peptide 3 (37 aa)
LYIPSAAAVSHSPLPIATPPPTPQEETRRGETARRRP*

>peptide 4 (29 aa)
MELCLLLISTSLLSNSRVGSFCVSTGIGI*

Sequence

>CNT30675831
ACCTATATATACCATCAGCCGCCGCCGTCTCCCATTCCCCTCTCCCCATCGCAACCCCGCCGCCGACGCCGCAGGAGGAGACGCGCCGAGGAGAGACCGC
GAGGAGGCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAAGCTGATGGAG
ATGGATGGTGGTGGTAATGGCATGCTTGTATGCATATCTTCAGATGCGATAGCCTCATGGAGAGATGTCTCCTAGCCATGGTGTTGCTGCTCATCGTCTG
TTGAATGGCTTGTCTTGGAAACCTGCGCTTCAGTAGGCCTGTTATCGTTGTTCTAGTTATATCGAGAGTTTTGCACTGAGACAAATCTGTCGTTTTGTGG
ACCTGTTATGGAGCTTTGTTTGCTGCTAATATCTACCAGCCTATTAAGTAATTCCCGTGTTGGTTCATTTTGTGTTTCAACTGGCATCGGTATTTGAATG
GTTCTCTGCTGCTGCTGGCTGAAGCTTCGTGGTTGATAGCTAT