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Detailed information on CNT3073498


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LE44|SMP1_ARATH, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Brassica junceaEucalyptus grandis13.4325.5493.9883forward
CNT30514313Brassica junceaJuglans regia13.4322.1993.9883forward
CNT3043839Brassica junceaPrunus dulcis9.2221.5198.2557forward
CNT30543139Brassica junceaBrassica napus95.6389.6898.48591forward
CNT30233654Brassica junceaBrassica oleracea38.5149.4894.12238forward
CNT30605418Brassica junceaGossypium raimondii13.4329.3390.3683forward
CNT30217757Brassica junceaKalanchoe fedtschenkoi13.5920.9591.6784forward
CNT30652446Brassica junceaRosa chinensis13.1126.2191.3681forward
CNT30126894Brassica junceaCorymbia citriodora12.9422.1693.7580forward
CNT30704991Brassica junceaPrunus avium13.5927.1895.2484forward
CNT30175528Brassica junceaVigna angularis13.2726.2893.982forward

Expression of CNT3073498

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MFVSHSNRLVFRLLRLSGCILYVIFVLCHLYGIMDNDLPWDVYKQCEVLRVTL*

Sequence

>CNT3073498
GCCTTATCCAATTTATGTAAGGGAGAGAGGAAACCCTAGCTATATGTAAGTGGTGAGAGTTCAGCGAGCAGAGACGACGCATCTAAGTTCGGCGAATTCA
CCATGAGAGCCAAGTGGAAGAAGAAGCGCATGAGGAGATTGAAGAGGAAGCGCAGGAAGATGAGACAGAGATCTAAGTAGTCTGCGTCATCGTGCCTTAT
CCATAAATCTCTGTGATCCCTTTCTTGTTTCTCGAACCATGATTTCAGACGCTGCCTGATCCTTTCCCTTTTCGATGCCTTGAGCGCTTGAGAACAGCTC
CACAGGCTCAGACTCTGCGATCTTGCCTCCTTCCAGTGGTGTCCCATGTTTGTATCTCACTCGAATCGCCTCGTCTTCCGATTGCTTCGTTTGAGCGGTT
GCATACTTTATGTCATCTTTGTTCTTTGCCATCTCTATGGTATAATGGATAATGACTTGCCATGGGACGTATATAAACAGTGCGAGGTTCTTCGTGTCAC
TCTCTAAGCTCTAGTGTTGTGCTTACTTCTCCTTGTTGTGTTTTTCTTTTGTTGACACGTTCACACTAGTTGCAATGTCGTCAAAATAAACACGCATTTT
TCTTTGTACCTAAGTTTT