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Detailed information on CNT30701352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675831Quercus lobataSetaria viridis20.214.7396.2580forward
CNT30523531Quercus lobataSetaria italica20.211.6696.2580forward
CNT30318276Quercus lobataCorylus avellana21.218.1596.4384forward
CNT30547713Quercus lobataIpomoea triloba20.459.4495.0681forward
CNT30518318Quercus lobataJuglans regia20.711398.7882forward
CNT30376000Quercus lobataArabidopsis thaliana20.7121.9395.1282forward
CNT30500546Quercus lobataCoffea canephora20.217.289580forward
CNT30278460Quercus lobataChenopodium quinoa21.7213.8398.8486forward
CNT3072716Quercus lobataQuercus suber79.0464.0194.25313forward
CNT30401878Quercus lobataBeta vulgaris21.7213.4896.5186forward
CNT30524689Quercus lobataPhaseolus vulgaris20.9618.2495.1883forward
CNT30628518Quercus lobataVigna unguiculata21.218.3595.2484forward
CNT30195551Quercus lobataPisum sativum20.9616.0995.1883forward
CNT30494259Quercus lobataOlea europaea20.4516.0795.0681forward
CNT30506885Quercus lobataNicotiana attenuata20.7115.1397.5682forward
CNT30712442Quercus lobataGlycine max21.215.0195.2484forward
CNT30638745Quercus lobataCapsicum annuum21.4616.796.4785forward
CNT3094527Quercus lobataSolanum tuberosum21.4616.2896.4785forward
CNT30191267Quercus lobataSecale cereale20.4523.8295.0681forward
CNT30307634Quercus lobataTriticum aestivum20.4512.6893.8381forward
CNT30227210Quercus lobataHordeum vulgare20.217.7493.7580forward
CNT30399552Quercus lobataTriticum turgidum20.4512.7493.8381forward
CNT30564366Quercus lobataActinidia chinensis21.2114.4892.8684forward
CNT3085655Quercus lobataVigna radiata20.9617.3395.1883forward
CNT30541757Quercus lobataBrassica napus20.9613.5495.1883forward
CNT30235682Quercus lobataBrassica oleracea20.215.6996.2580forward
CNT30248711Quercus lobataAvena sativa20.4514.3493.8381forward
CNT3060259Quercus lobataArabidopsis lyrata21.7210.2993.0286forward
CNT3081183Quercus lobataBrassica juncea20.4515.496.381forward
CNT30261673Quercus lobataBrassica rapa20.27.39580forward
CNT30601041Quercus lobataFraxinus excelsior20.4514.5293.8381forward
CNT30468162Quercus lobataSaccharum spontaneum20.210.939580forward
CNT30610456Quercus lobataGossypium raimondii21.469.1492.9485forward
CNT30219096Quercus lobataKalanchoe fedtschenkoi19.9522.5194.9479forward
CNT3067939Quercus lobataLeersia perrieri16.6722.9296.9766reverse complement
CNT30652446Quercus lobataRosa chinensis20.4526.2193.8381forward
CNT30213082Quercus lobataHelianthus annuus20.9618.4993.9883forward
CNT30715353Quercus lobataMalus domestica golden20.716.6796.3482forward
CNT30722856Quercus lobataTriticum spelta20.4519.1593.8381forward
CNT30478095Quercus lobataArabidopsis halleri20.218.8792.580forward
CNT30596688Quercus lobataOryza meridionalis20.4515.0397.5381forward
CNT30355299Quercus lobataLactuca sativa20.9611.9493.9883forward
CNT30429165Quercus lobataPapaver somniferum20.9623.3893.9883forward
CNT30704989Quercus lobataPrunus avium20.9610.9196.3983forward
CNT30642554Quercus lobataCannabis sativa21.2114.5692.8684forward
CNT3024261Quercus lobataPopulus trichocarpa20.9610.1395.1883forward
CNT30120214Quercus lobataCitrus clementina20.9616.1896.3983forward
CNT30584684Quercus lobataEchinochloa crusgalli20.216.7496.2580forward
CNT30604511Quercus lobataOryza punctata20.4515.5596.381forward
CNT30174981Quercus lobataVigna angularis20.9616.8795.1883forward
CNT30112246Quercus lobataFicus carica20.9614.8795.1883forward
CNT30723374Quercus lobataLupinus angustifolius20.719.2997.5682forward
CNT30115234Quercus lobataEutrema salsugineum21.2120.5992.8684forward

Expression of CNT30701352

Peptides detected in this lncRNA

>peptide 1 (57 aa)
HLSHFPLGSSRVSEKPNEARNTTAAVFVSSITMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (32 aa)
IFHIFPSDHLGFLKNQTKQETQPRRFSLAQSP*

>peptide 3 (29 aa)
MLTDTVSFCLMFCLFESLETNRGLRFFSL*

Sequence

>CNT30701352
CATCTTTCACATTTTCCCCTCGGATCATCTAGGGTTTCTGAAAAACCAAACGAAGCAAGAAACACAACCGCGGCGGTTTTCGTTAGCTCAATCACCATGA
GAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCTAAGTAGAAATGCTTACAGATACAGTCTCCTTT
TGTTTAATGTTTTGTCTTTTTGAGTCTCTAGAAACAAACAGAGGATTGCGTTTTTTTTCTCTGTAATGTCTTTTGATCAAAACTCTGTTGTTGTTAGATT
CTATCTAATGGATTATTATTATTAGTTTTTGGATTTTTATTTGGTTCTGTTTTGATTAATTTTTTTGAGAATGTTTATGATTCCGCATTATAATTG