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Detailed information on CNT30596688


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Oryza meridionalisOryza sativa29.3157.8894.94158reverse complement
CNT30533222Oryza meridionalisEucalyptus grandis14.8424.629580forward
CNT30317675Oryza meridionalisCorylus avellana11.523.0598.3962forward
CNT30549577Oryza meridionalisIpomoea triloba14.4721.7994.8778reverse complement
CNT30514313Oryza meridionalisJuglans regia15.0321.6695.0681forward
CNT30701352Oryza meridionalisQuercus lobata15.0320.4597.5381forward
CNT30376000Oryza meridionalisArabidopsis thaliana15.0321.6692.5981forward
CNT3071712Oryza meridionalisQuercus suber15.0320.497.5381forward
CNT30506884Oryza meridionalisNicotiana attenuata14.4731.3397.4478forward
CNT30191267Oryza meridionalisSecale cereale15.772597.6585forward
CNT30224947Oryza meridionalisHordeum vulgare15.0327.5593.8381forward
CNT30395161Oryza meridionalisTriticum turgidum14.6622.1993.6779forward
CNT3074476Oryza meridionalisBrassica juncea15.0320.7292.5981forward
CNT30467175Oryza meridionalisSaccharum spontaneum11.1325.6498.3360forward
CNT30137004Oryza meridionalisLolium perenne15.0334.6292.5981forward
CNT30219096Oryza meridionalisKalanchoe fedtschenkoi14.4722.2294.8778forward
CNT3067939Oryza meridionalisLeersia perrieri18.7435.0792.08101reverse complement
CNT30652446Oryza meridionalisRosa chinensis14.6625.5796.279forward
CNT30126894Oryza meridionalisCorymbia citriodora14.8422.1692.580forward
CNT30722856Oryza meridionalisTriticum spelta15.7720.0996.4785forward
CNT30619768Oryza meridionalisCajanus cajan14.84329580forward
CNT30429165Oryza meridionalisPapaver somniferum15.0322.8293.8381forward
CNT30572709Oryza meridionalisVitis vinifera15.9629.0595.3586forward
CNT30704991Oryza meridionalisPrunus avium15.0326.2193.8381forward
CNT3024248Oryza meridionalisPopulus trichocarpa14.8425.089580forward
CNT30102799Oryza meridionalisOryza rufipogon66.6104.0691.09359reverse complement
CNT30604511Oryza meridionalisOryza punctata73.8476.3990.2398forward
CNT30175528Oryza meridionalisVigna angularis14.6625.3294.9479forward
CNT30725207Oryza meridionalisLupinus angustifolius14.6621.9494.9479forward

Expression of CNT30596688

Peptides detected in this lncRNA

>peptide 1 (33 aa)
YIYHHAPPLSHFLPFPPPPPKKKKKKKPTRRRP*

>peptide 2 (44 aa)
MVMACRSDPCLRLPSSLICQAVWRGVTIRLLNGLFTCAVIILYP*

>peptide 3 (57 aa)
PIYTTTRRLSPTSSLSHRRRRRRRRRRSRRGGDHEGQVEEEAYEEAEEEAPKDEAEI*

>peptide 4 (58 aa)
LYIPPRAASLPLPPFPTAAAEEEEEEEADEEATMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 5 (66 aa)
MSSAAKLVDMSSCLAWCHHSSVEWLIYLCCYHLISLVLPRASHQDMSVQLCELVMEPYLLLIFTYC*

Sequence

>CNT30596688
CCTATATATACCACCACGCGCCGCCTCTCTCCCACTTCCTCCCTTTCCCACCGCCGCCGCCGAAGAAGAAGAAGAAGAAGAAGCCGACGAGGAGGCGACC
ATGAGGGCCAAGTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAGGCGAAGAAGATGGGCGATCATG
GTGATGGCGTGTCGCAGTGATCCATGTCTTCGGCTGCCAAGCTCGTTGATATGTCAAGCTGTTTGGCGTGGTGTCACCATTCGTCTGTTGAATGGCTTAT
TTACCTGTGCTGTTATCATCTTATATCCCTAGTTTTACCAAGAGCTTCGCACCAAGACATGTCGGTTCAGTTATGTGAACTTGTTATGGAGCCGTATTTG
CTGCTAATATTTACCTACTGTTGAGTAATAGCTTTGTTGGCTCTGTGGTAACATCTGTTGATTGCTGCTTTATCTGTTGCATTTGGTGTGTTGATTGCTT
GCTTGTTTGATGGTAAGGAGTTAAGTGTAGGAATTTCCC