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Detailed information on CNT30199009


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Pisum sativumOryza sativa15.8221.0592.8684forward
CNT30317675Pisum sativumCorylus avellana12.2424.1698.4665forward
CNT30549577Pisum sativumIpomoea triloba14.8822.0796.279reverse complement
CNT30224947Pisum sativumHordeum vulgare15.6328.2391.5783forward
CNT30395161Pisum sativumTriticum turgidum15.6323.3191.5783forward
CNT30145007Pisum sativumMedicago truncatula32.5829.1286.71173forward
CNT30309894Pisum sativumCamelina sativa15.0738.2896.2580forward
CNT30217757Pisum sativumKalanchoe fedtschenkoi15.4420.4596.3482forward
CNT30652446Pisum sativumRosa chinensis14.3124.694.7476forward
CNT30704991Pisum sativumPrunus avium14.8825.5797.4779forward
CNT3024248Pisum sativumPopulus trichocarpa14.524.1496.177forward
CNT30175528Pisum sativumVigna angularis14.3124.3698.6876forward
CNT30725207Pisum sativumLupinus angustifolius14.6921.6796.1578forward
CNT30115231Pisum sativumEutrema salsugineum14.8821.4192.4179forward

Expression of CNT30199009

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLKPEPFYFLGFTIRYKIPKLNLLLFLIAVTSAQSPLRSIRVFSQQVLFRFQPQ*

Sequence

>CNT30199009
GGGCTAAATGTTAAAGCCCGAACCATTCTATTTTCTAGGGTTTACGATTCGCTATAAAATCCCCAAACTCAACCTCCTTCTCTTCCTAATCGCAGTTACT
TCTGCGCAGTCTCCTTTACGTTCGATTAGGGTTTTCTCTCAACAAGTTCTCTTCCGTTTTCAACCGCAATGAGGGCCAAGTGGAAGAAGAAGCGTATGAG
GAGGTTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGTGTGTGTTCTCAGCCATCATCGTCTGCTCTTAGTTTTGTTTTTCCCTTTCGTGT
TGTTTTTTGTTATTTAATCAGACTCCTCAGCAAGAGAGTGGTATCTGTTTCTCTCTCTTTTTGCTGTTATGATATTTTGGTTTTGTATTAGCTCAAAGAT
ATTGTTCTTTTTGGAATTGAGTAGCTATAACATTTGAATTTCGTTCTATTGTGGTTGATTTTGATTTTTGTTGTTCTTTCTGCAATTTTAGATAGTTCTT
TTTGACCATATTCTCCTCTATATCTTTCCAT