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Detailed information on CNT30628518


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Vigna unguiculataEucalyptus grandis8.1525.2396.3482forward
CNT30549577Vigna unguiculataIpomoea triloba7.7521.7996.1578reverse complement
CNT30514313Vigna unguiculataJuglans regia8.2522.1998.883forward
CNT30701352Vigna unguiculataQuercus lobata8.3521.2195.2484forward
CNT3071712Vigna unguiculataQuercus suber8.3521.1695.2484forward
CNT3074476Vigna unguiculataBrassica juncea8.1520.9792.6882forward
CNT30605418Vigna unguiculataGossypium raimondii8.3529.6895.2484forward
CNT30219096Vigna unguiculataKalanchoe fedtschenkoi7.7522.2293.5978forward
CNT30652446Vigna unguiculataRosa chinensis8.0526.2193.8381forward
CNT30126894Vigna unguiculataCorymbia citriodora7.9522.1696.2580forward
CNT30572709Vigna unguiculataVitis vinifera8.4528.7296.4785forward
CNT3024248Vigna unguiculataPopulus trichocarpa8.1525.7196.3482forward
CNT30174981Vigna unguiculataVigna angularis24.0649.1988.43242forward
CNT30115234Vigna unguiculataEutrema salsugineum8.3520.5991.6784forward

Expression of CNT30628518

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKLSYHCAENGAIQLLERNVRVTVILFLFFFFNISSMK

>peptide 2 (29 aa)
MYLWRNNLNLKKLYEIIISLCREWCNSTS*

>peptide 3 (50 aa)
GSGSMIKPDACYLLGFLLRYKFLKRKSPSVIRSLVSAIYQGFTSESPFGC*

Sequence

>CNT30628518
CGGGTCCGGGTCCATGATTAAGCCCGATGCTTGTTATTTGCTAGGGTTTCTGCTTCGCTATAAATTCCTCAAGCGTAAATCTCCATCAGTAATACGCAGC
CTAGTCTCTGCTATCTACCAAGGTTTTACTTCTGAGTCTCCTTTCGGTTGTTGATCGTTGATCACCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGA
GATTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGATCTGTAACGCAATTTGCATACATTGGTTACGTTTCACGTTGTTTTGGTTGGT
TTGCTTAATGCGAATGATGTGAAGGTCCATCTTGTTTAGATCAGTGAAAGAGAATGAATTTCGATAGAATAAAAATATCATCAATGGCTGGGTAGTAGAG
GAAGGTGATGTATGTATGTGCTCCATAGGAAGAAGATTGTGAAGTCGTGTTAGGTGTTATCATGATCTTGTAGTCTCGGAGAAGGGTCTCTGTTTAATTT
GTTGGTATCAGTTTCTGTGAATTTTCTGCTCTTGCTCTTAGTTTGATCACTAGGTGCCCACGGTATATTTTTATTTTTAGATGTGAGCCCCCGAAATGTA
ATTCTTCGGAGTTTATTAGGGTGATGTGTTTAGTTGTCATTTGTTTTGGTTGTATGATACACTTTGTTTCTTTCATCTTGCGGTGATGATGTACCTTGGC
TATCGTTGCTTGTTAAAATGCGTGTTTTGAATTAAATCAAACTTAGGATAAGGATGTGGAGATTTTGCATTGGAGAGATCAAGTTCACCCCGCTCACTTT
CAACTAACATCTTAGAGCGGTAACTTAAACTCTGAAACACCTTAGCAAATATGTATCTTTGGAGAAACAATCTGAACCTTAAAAAGCTTTATGAAATTAT
CATATCATTGTGCCGAGAATGGTGCAATTCAACTTCTTGAGAGGAATGTACGTGTGACTGTAATCTTGTTTCTTTTTTTTTTCTTCAATATCTCATCAAT
GAAAAT