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Detailed information on CNT3057178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Amborella trichopodaOryza sativa13.3421.0494.8177reverse complement
CNT30677986Amborella trichopodaSetaria viridis12.1322.3697.1470reverse complement
CNT30533222Amborella trichopodaEucalyptus grandis13.3423.6994.8177reverse complement
CNT30317675Amborella trichopodaCorylus avellana11.0923.7995.3164reverse complement
CNT30549577Amborella trichopodaIpomoea triloba14.2122.9192.6882forward
CNT30514313Amborella trichopodaJuglans regia13.6921.1292.4179reverse complement
CNT30191267Amborella trichopodaSecale cereale13.5222.9494.8778reverse complement
CNT30224947Amborella trichopodaHordeum vulgare13.5226.5394.8778reverse complement
CNT30395161Amborella trichopodaTriticum turgidum13.5221.9194.8778reverse complement
CNT30590300Amborella trichopodaMusa acuminata11.793494.1268reverse complement
CNT30309894Amborella trichopodaCamelina sativa14.0438.7691.3681reverse complement
CNT30467175Amborella trichopodaSaccharum spontaneum10.7526.598.3962reverse complement
CNT30137004Amborella trichopodaLolium perenne13.5233.3392.3178reverse complement
CNT30219096Amborella trichopodaKalanchoe fedtschenkoi13.6922.5193.6779reverse complement
CNT3067939Amborella trichopodaLeersia perrieri11.4422.9296.9766forward
CNT30652446Amborella trichopodaRosa chinensis13.1724.692.1176reverse complement
CNT30721855Amborella trichopodaTriticum spelta13.5220.5394.8778reverse complement
CNT30619768Amborella trichopodaCajanus cajan13.5231.292.3178reverse complement
CNT30572709Amborella trichopodaVitis vinifera11.7922.9795.5968reverse complement
CNT30704991Amborella trichopodaPrunus avium13.5225.2493.5978reverse complement
CNT3024248Amborella trichopodaPopulus trichocarpa13.3424.1492.2177reverse complement
CNT30175528Amborella trichopodaVigna angularis13.1724.3692.1176reverse complement

Expression of CNT3057178

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRFFFHWALIFKFHKRPQQHTIPTSKQWQRENPSGTLQSDRKPKN*

Sequence

>CNT3057178
TCACACAGTTGATCATCACCACAATTGAATAAACCGGTAAAGCTTGAAGGAAGAACTAAAGAGAAATCTCAATAACCAACTGTAAGCAACAAACATTTAA
AATTGTCTCCCAAAATTGAAGATTAGTACGACTACCATTCAAGTTCTCTCAAACAAGATAAACAAAACATAAGAACAACCTAGTTTCTGAATAGACGATT
GCTCAGGATTCTGATTATAAGACCTAACAAGGCATTCCCCGCTAAATCAAACCACCAATCCAAAAAAGATTTGGAAAGGAGGAGACCCAGAGAAGATCAC
CCTTGTCAAAGCTATCATCATTGTCTACTTGGATCTCTGCCTCATCTTTCGGCGCTTCCTCTTGAGCCTCCTCATGCGCTTCTTCTTCCACTGGGCCCTC
ATTTTCAAATTCCACAAGCGACCTCAGCAGCACACTATCCCGACTTCAAAACAATGGCAGAGAGAAAACCCTAGCGGCACTTTACAGAGTGACCGAAAAC
CCAAAAACTGATGCCCCCTTATATAGATCTTCTGAGGTAACCCTAATCCATGGGGCATGGCTTCGGAACCGCATTAC