Detailed information on CNT30401878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701352Beta vulgarisQuercus lobata13.4821.7296.5186forward
CNT3071712Beta vulgarisQuercus suber13.4821.6696.5186forward
CNT30506884Beta vulgarisNicotiana attenuata12.5432.1396.2580forward
CNT3043839Beta vulgarisPrunus dulcis8.6220.7598.1855forward
CNT3094050Beta vulgarisSolanum tuberosum12.5420.0596.2580forward
CNT30236394Beta vulgarisBrassica oleracea12.3821.3593.6779forward
CNT3074476Beta vulgarisBrassica juncea13.0121.2395.1883forward
CNT30261820Beta vulgarisBrassica rapa12.3825.2493.6779forward
CNT30609975Beta vulgarisGossypium raimondii12.3820.8492.4179forward
CNT30652446Beta vulgarisRosa chinensis12.726.2192.5981forward
CNT30429165Beta vulgarisPapaver somniferum13.7924.7994.3288forward
CNT30115210Beta vulgarisEutrema salsugineum12.2331.7193.5978forward

Expression of CNT30401878

Peptides detected in this lncRNA

>peptide 1 (34 aa)
HKPKYRETSLGFHYKLTPKPSLASVSYQILFSLS*

Sequence

>CNT30401878
CACAAGCCCAAATATAGAGAAACTTCACTAGGGTTTCACTATAAATTAACCCCAAAACCCTCTCTTGCTTCCGTTTCCTATCAAATCCTTTTTTCTCTCT
CCTAAAACATCATCTGTTAATTAGGGTTTCGAAGTTGCCGTCGTTTTTCATCATCTCACCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGA
AGAGGAAGCGTCGAAAGATGAGACAAAGATCTAAGTAGAAAGAAGATCTTCAACTGTTATGGAATTGGTCATTGATTTGTAGTTTAAGATGCAGATGATA
GATGAACGTGTGTGAGATCGTAATCTATATCAACGTAGGATTGTATGTTTGGTGGTCCTTGGTATGAAATCTTTCATTTCTTATAGGTTGAAGTATGATT
TTAGTTGGGTTTACTGAAAGTGCTGCTGGTTGCTGATAGAAAAGTTGTATTGGCAAGCCTGAGGCCATCACATTTGCTATGTTCAGAAAGTATCTCAAGG
TTGCTACATTGATTGATATATTTTGGCTGATTTTCACCCAAACATGAAGTTTGTTGTGAATATTAAAGCTTGATCATTGAGTTGTAGGCGGAGATGCAGA
TGATAGATGAAAGTGTGAGATCGTATTGTATATCGACA