Detailed information on CNT30242945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317675Avena sativaCorylus avellana9.824.1693.8565forward
CNT30549577Avena sativaIpomoea triloba11.7621.7992.3178reverse complement
CNT30514313Avena sativaJuglans regia11.7620.8692.3178forward
CNT30217757Avena sativaKalanchoe fedtschenkoi12.3720.4595.1282forward
CNT30652446Avena sativaRosa chinensis11.4624.694.7476forward
CNT30619768Avena sativaCajanus cajan11.7631.292.3178forward
CNT30572709Avena sativaVitis vinifera11.9226.6992.4179forward
CNT3024248Avena sativaPopulus trichocarpa11.6124.1492.2177forward
CNT30175528Avena sativaVigna angularis11.4624.3692.1176forward
CNT30725207Avena sativaLupinus angustifolius11.7621.6792.3178forward

Expression of CNT30242945

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MPLKSRFPKSVCAKALDLLSGSSVISYCSCNWKGILVLASGIGYLYLYIIPDQLYLAGKFLL*

>peptide 2 (90 aa)
PARVCPSSPYIKPRREQPPLHIRFSLFQQPPPYEVAAPRSERHRRRDEGQVEEEEDEEAQEEAPKDEAEIQVGGVAQPASVSWPLSDAVC*

Sequence

>CNT30242945
CCCGGCTAGGGTTTGTCCATCGTCGCCCTATATAAAACCACGACGAGAGCAGCCGCCGCTTCACATCCGCTTCTCACTCTTCCAACAGCCGCCGCCGTAC
GAGGTAGCCGCGCCGAGGAGCGAGCGCCACCGCCGACGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATG
AGGCAGAGATCCAAGTAGGAGGAGTAGCCCAGCCTGCTTCTGTTTCTTGGCCGCTGTCGGATGCAGTTTGCTAATCGAATTTAGTTCAGTACTCAATTTA
GTTCTTGCCAGCAGGAAAACCTATCCTAGTGGACTGTATCTTCAATTTTAAACCTCCGTTCTTGCATCCTGTTTGTGAGGTGTTAATGAAGACTGTTGTT
CTTCAGTATTATCTTGCAGTTAGCAACAATGCCATTGAAATCTCGTTTCCCCAAATCTGTTTGTGCTAAAGCGTTGGATTTGTTATCTGGATCTAGTGTC
ATTTCATATTGCAGCTGTAACTGGAAGGGCATTTTGGTTTTGGCCAGTGGCATTGGTTATCTTTATTTATATATAATTCCTGACCAGTTGTACTTAGCGG
GCAAATTCCTTCTGTGAATTGATATCGCCGTATAATCTGGAATTGTGATATATCCAAATTGCA