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Detailed information on CNT30260384


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Brassica rapaEucalyptus grandis7.5425.8594.0584forward
CNT30514313Brassica rapaJuglans regia7.4522.1993.9883forward
CNT30376000Brassica rapaArabidopsis thaliana8.3524.8791.493forward
CNT30506884Brassica rapaNicotiana attenuata7.2732.5393.8381forward
CNT30538793Brassica rapaBrassica napus34.3899.2295.3383forward
CNT3078393Brassica rapaBrassica juncea8.5321.7492.6395forward
CNT30611796Brassica rapaArabis alpina8.6221.5291.6796forward
CNT30605418Brassica rapaGossypium raimondii7.4529.3390.3683forward
CNT30217757Brassica rapaKalanchoe fedtschenkoi7.2720.293.8381forward
CNT30652446Brassica rapaRosa chinensis7.2726.2191.3681forward
CNT30126894Brassica rapaCorymbia citriodora6.9121.3394.8177forward
CNT30619768Brassica rapaCajanus cajan7.0931.694.9479forward
CNT30704991Brassica rapaPrunus avium7.5427.1895.2484forward
CNT3024248Brassica rapaPopulus trichocarpa7.3625.7191.4682forward
CNT30175528Brassica rapaVigna angularis7.3626.2893.982forward
CNT30115234Brassica rapaEutrema salsugineum8.2622.5595.6592forward

Expression of CNT30260384

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFVWLVVRAASIKTKQKTSSFPCIQIMITN

>peptide 2 (36 aa)
MCRTCYLLTPFYYLQSRGLILGFNVIKFKCNTLTID*

>peptide 3 (66 aa)
MVKTAHQSVVSFIFETCIVCRQINNGPSDGALLRSGLDLIQPLVYDSRDWCKTSGYYADTHSWQES*

>peptide 4 (81 aa)
MGLAMEPSLDLVLILSSHWYMIQEIGARPLATMQILTHGKRAESIDLRFFDNNVPLRISDIASSVLSVCCYVRPSFYGAWP*

Sequence

>CNT30260384
TTACACATCCTTACATGGGCCTTCTTAGGCCCGTTTAAAATATTAGGGCCTTGTCCAATTTTAAGCTAGGGGAAGTAGAAACCCTAGCTATATATAGTAG
AGAGACGAGTGAAACTCAGCTGAACATCCCAGCTCGGCGATTTCACGATGAGAGCCAAGTGGAAGAAGAAGCGCATGAGGAGATTGAAGAGGAAGCGCAG
AAAGATGAGACAGAGATCTAAGTAGTCTTTGTCTTGCTCTATCTTCTAATCTCTGGTGGTTGCTTTCTAGTTTCTTGAACCGTTTATGTTTTGTGTTTTG
AACAATCATGTGTAGAACATGTTATTTGCTTACTCCCTTTTATTATCTACAAAGCAGAGGTTTAATATTAGGCTTCAATGTTATAAAATTTAAGTGCAAC
ACCCTAACCATTGATTGAACGATTAAGAATTGAGACGTAGCACACACCTTCTCGATTCTCTTATAATACCCTTTCTCACATTAAAAGAAAAGAGGAGAGA
GTATATACAATATAATTGACTCGATGAAGAAAATGAAACTGATGATGATGCTAAGGGGATGCAAGAGCGTCGTCTAAATAATGGTCAAGACAGCCCACCA
AAGTGTTGTTTCATTTATTTTTGAGACTTGCATTGTATGTAGGCAGATAAATAATGGGCCTAGCGATGGAGCCCTCCTTAGATCTGGTCTTGATCTTATC
CAGCCACTGGTATATGATTCAAGAGATTGGTGCAAGACCTCTGGCTACTATGCAGATACTCACTCATGGCAAGAGAGCTGAGAGTATAGACCTGAGATTT
TTTGATAATAATGTCCCTTTGAGGATTAGTGATATAGCGTCCTCCGTGTTATCTGTCTGCTGTTACGTCAGGCCTTCGTTTTATGGAGCATGGCCTTGAA
TTGCTGTGAAATATAATAGACCGCAAGCAAAAAAAATATTATTGGCTTTACTAGATAACAGTAAATAAAACTCTCATAAAAAATGGCTGATAATTTACAT
ATTTTAAAATTGGCTGGAAGCATATGTTTGTATGGCTTGTAGTCAGGGCCGCTAGCATTAAAACTAAACAGAAGACGAGTAGCTTCCCATGTATTCAGAT
CATGATCACCAACT