Detailed information on CNT3050740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Cucumis sativusOryza sativa11.6721.0492.2177forward
CNT30533222Cucumis sativusEucalyptus grandis12.5825.5492.7783forward
CNT30317675Cucumis sativusCorylus avellana9.8524.1695.3865forward
CNT30549577Cucumis sativusIpomoea triloba12.7323.4694.0584reverse complement
CNT30514313Cucumis sativusJuglans regia11.9721.1294.9479forward
CNT30506280Cucumis sativusNicotiana attenuata11.6726.194.8177forward
CNT30224947Cucumis sativusHordeum vulgare11.8226.5392.3178forward
CNT30395161Cucumis sativusTriticum turgidum11.8221.9192.3178forward
CNT30538793Cucumis sativusBrassica napus13.3322.889.7788forward
CNT30652446Cucumis sativusRosa chinensis11.6724.9296.177forward
CNT30207452Cucumis sativusHelianthus annuus9.3922.2296.7762forward
CNT30126894Cucumis sativusCorymbia citriodora11.8221.6196.1578forward
CNT30721855Cucumis sativusTriticum spelta11.8220.5392.3178forward
CNT30619768Cucumis sativusCajanus cajan12.123292.580forward
CNT30429165Cucumis sativusPapaver somniferum11.9722.2593.6779forward
CNT3037443Cucumis sativusCucumis melo15.7640.4799.04104reverse complement
CNT30175528Cucumis sativusVigna angularis12.4226.2893.982forward
CNT30115231Cucumis sativusEutrema salsugineum12.4222.2290.2482forward

Expression of CNT3050740

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NGPSGPSKFKPTLKLGFYHYINKSEALPS*

Sequence

>CNT3050740
AATGGCCCAAGTGGCCCATCGAAGTTCAAGCCGACTTTAAAATTAGGGTTTTACCACTATATAAATAAATCCGAAGCCCTACCTTCCTGAACGTCGTCGA
TCTCGTCACTCGCCTCGTTCGCCACACCATTGTTCTTCTTTGGTGATTCGGTTAGCAGTTCTTCAACATGAGGGCTAAGTGGAAGAAGAAGAGAATGAGG
AGATTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTTTGTGTCTTCTTTAAATAAAAAAGACAATCGTTCCTTTAGTTTCTACTGATCTA
GGACGAGTAATAGTTCATTTTCTTGTGTTTTTGTTGGATTTTTATCGATTTCTTTTAGTTTCGATGAGCAATTTTGTTGAACTTACTTCCCTCTGGGATC
TACATTATTGAATTCACTTTCTGGAGTTTCTGAAATATCAGTTGATGATATGTTGTTTGTCACCATTAACTTAAAAACTTGATATTTTTTTCTTCATTGT
CCAAGTATATTGTTGACCCATCTCTAACATTCCATCGGTATATGCATGTAAACGCCTATATTGATGATTACTTTTAAAGTCCTACATTGATGATTACTTA
TAAAGTTACAGTCGGTCCAACCAAGTATTAGTGAAGTTTGAAGAATTTTTCTTAGATCCA