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Detailed information on CNT30163346


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Pistacia veraEucalyptus grandis11.6323.6997.477forward
CNT30317675Pistacia veraCorylus avellana9.3723.0510062forward
CNT30549577Pistacia veraIpomoea triloba11.7821.7997.4478reverse complement
CNT30514313Pistacia veraJuglans regia11.7820.8697.4478forward
CNT30525538Pistacia veraPhaseolus vulgaris14.0520.3194.6293forward
CNT30506884Pistacia veraNicotiana attenuata11.3330.1210075forward
CNT30191267Pistacia veraSecale cereale11.9323.2494.9479forward
CNT3078045Pistacia veraBrassica juncea11.7820.7494.8778forward
CNT30219096Pistacia veraKalanchoe fedtschenkoi11.9322.5194.9479forward
CNT3067939Pistacia veraLeersia perrieri10.1223.2697.0167reverse complement
CNT30652446Pistacia veraRosa chinensis11.4824.696.0576forward
CNT30572709Pistacia veraVitis vinifera11.9326.6997.4779forward
CNT30704991Pistacia veraPrunus avium11.7825.2496.1578forward
CNT3024248Pistacia veraPopulus trichocarpa11.6324.1497.477forward
CNT30725207Pistacia veraLupinus angustifolius11.7821.6794.8778forward

Expression of CNT30163346

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDYMDEAVKNGGDSLSGKLFLFHLLVLGLAAMSIKNFRMLFECIE*

>peptide 2 (40 aa)
MDEPSPEVSSSLDFSAWTIWMKLSRMEGILFRGSFFCFIF*

>peptide 3 (31 aa)
MLILSLFYNFMMLTQVLCGCQVGLFKFDHFKQ

Sequence

>CNT30163346
CTATAGAATTCCAGCGGAAATAGGGTTTCCGTGAAAGAAACCCTAGCCCTATAAATACGAACTTAACACTGGCTGTCTCTCCTTTACCTCGAAAGCATTC
TCTCTCAATCAAAGGATCATCTTCATCGTCTTAGGTAAGTCGACCGAGAAAGAGAGACCGTAATCCAAGATGAGAGCCAAGTGGAAGAAGAAGCGTATGA
GGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTAGGTGCTAGATCATGGATGAGCCTTCTCCTGAAGTGTCTTCTTCTTTGGACTTTT
CAGCATGGACTATATGGATGAAGCTGTCAAGAATGGAGGGGATTCTCTTTCGGGGAAGCTTTTTCTGTTTCATCTTCTAGTTCTAGGTTTAGCAGCCATG
AGTATTAAGAATTTTAGAATGTTGTTTGAGTGTATTGAATAGTACTATCTGAGTATTTTGTCGATTATATGTTTTAAGTGTTTGCCTACAGTTGTTTTAC
TTAATATGCAGTGGTTAAATATATTGAAAATCTAATGGTTGCCTTTCTAAATCTGTGTTAATATTATGTTGATTTTGTCATTGTTTTACAATTTTATGAT
GCTAACACAAGTGCTGTGTGGTTGCCAGGTTGGTTTGTTTAAGTTTGACCATTTTAAGCAAT