« Back to Oryza sativa search


Detailed information on CNT30692294


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678059Oryza sativaSetaria viridis22.8116.8298.991forward
CNT30533222Oryza sativaEucalyptus grandis19.323.6993.5177forward
CNT30317675Oryza sativaCorylus avellana16.2924.1693.8565forward
CNT30549577Oryza sativaIpomoea triloba19.5521.7992.3178reverse complement
CNT30514313Oryza sativaJuglans regia19.5520.8692.3178forward
CNT30376000Oryza sativaArabidopsis thaliana20.0521.3991.2580forward
CNT30199009Oryza sativaPisum sativum21.0515.8292.8684forward
CNT30494259Oryza sativaOlea europaea20.0515.8793.7580forward
CNT30503465Oryza sativaNicotiana attenuata20.0515.4193.7580forward
CNT30708369Oryza sativaGlycine max20.813.7695.1883forward
CNT3096535Oryza sativaSolanum tuberosum20.0516.3992.580forward
CNT30395161Oryza sativaTriticum turgidum22.312597.7589forward
CNT30566808Oryza sativaActinidia chinensis20.0511.769080forward
CNT30243105Oryza sativaAvena sativa22.3115.3298.8889forward
CNT30309894Oryza sativaCamelina sativa19.5537.3291.0378forward
CNT3060340Oryza sativaArabidopsis lyrata20.0516.2691.2580forward
CNT3078393Oryza sativaBrassica juncea20.5518.7690.2482forward
CNT30599582Oryza sativaFraxinus excelsior20.0517.7492.580forward
CNT30447879Oryza sativaSaccharum spontaneum22.8117.6797.891forward
CNT30219096Oryza sativaKalanchoe fedtschenkoi21.0523.9394.0584forward
CNT30652446Oryza sativaRosa chinensis19.0524.696.0576forward
CNT30207452Oryza sativaHelianthus annuus15.5422.2295.1662forward
CNT30127630Oryza sativaCorymbia citriodora20.0517.99580forward
CNT30713631Oryza sativaMalus domestica golden20.815.993.9883forward
CNT30722009Oryza sativaTriticum spelta22.3121.2497.7589forward
CNT30348900Oryza sativaEragrostis tef22.8119.6110091forward
CNT30619768Oryza sativaCajanus cajan19.831.692.4179forward
CNT30704991Oryza sativaPrunus avium19.825.5792.4179forward
CNT3024248Oryza sativaPopulus trichocarpa19.324.1492.2177forward
CNT30326905Oryza sativaAsparagus officinalis20.0518.2297.580forward
CNT30579574Oryza sativaEchinochloa crusgalli22.8118.3810091forward
CNT30499031Oryza sativaDigitaria exilis22.8117.0197.891forward
CNT30593864Oryza sativaEragrostis curvula22.8116.3110091forward
CNT30175528Oryza sativaVigna angularis19.0524.3692.1176forward
CNT30725207Oryza sativaLupinus angustifolius19.5521.6792.3178forward
CNT30115234Oryza sativaEutrema salsugineum20.0519.619080forward

Expression of CNT30692294

Peptides detected in this lncRNA

>peptide 1 (89 aa)
ISPGSPPPQIRRRRRRERRDRERVLRRPRRRDEGQVEEEENEEAQEEAPKDEAEIQVVVISSVDVFLHHVDRCIWIDGAFGFLMFQLLV*

>peptide 2 (31 aa)
LTRFAASTNPPPPTSREKGQRASASPSPPPR*

>peptide 3 (56 aa)
SHPVRRLHKSAAADVEREGTESECFAVPAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30692294
ATCTCACCCGGTTCGCCGCCTCCACAAATCCGCCGCCGCCGACGTCGAGAGAGAAGGGACAGAGAGCGAGTGCTTCGCCGTCCCCGCCGCCGCGATGAGG
GCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTCGTTATCAGTAGTGTGGATGTCTTCTT
ACATCATGTTGACCGGTGCATTTGGATTGATGGTGCCTTCGGATTCTTGATGTTCCAGTTATTGGTGTAGGAATGTGAAACCTTTTCTGGTTTTGGTTAA
TTCTAGCTGTTGAAATGTCTCTGGTTATGTTCCTAGACTGGAGTATTATGTAATGTGATGACCATAATTCGCTTTATGAAAGTTTATGAGATTTGAAGT