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Detailed information on CNT30233654


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Brassica oleraceaEucalyptus grandis17.2625.5495.1883forward
CNT30506884Brassica oleraceaNicotiana attenuata17.0532.9395.1282forward
CNT3043839Brassica oleraceaPrunus dulcis11.8521.5110057forward
CNT30541697Brassica oleraceaBrassica napus62.7975.6999.01302forward
CNT3073498Brassica oleraceaBrassica juncea49.4838.5194.12238forward
CNT30217757Brassica oleraceaKalanchoe fedtschenkoi17.4620.9592.8684forward
CNT3067939Brassica oleraceaLeersia perrieri13.7222.9293.9466reverse complement
CNT30652446Brassica oleraceaRosa chinensis16.8426.2192.5981forward
CNT30126894Brassica oleraceaCorymbia citriodora16.6322.1692.580forward
CNT30572709Brassica oleraceaVitis vinifera17.2628.0492.7783forward
CNT30704991Brassica oleraceaPrunus avium17.4627.1896.4384forward
CNT3024248Brassica oleraceaPopulus trichocarpa17.0525.7192.6882forward
CNT30175528Brassica oleraceaVigna angularis17.0526.2892.6882forward
CNT30115234Brassica oleraceaEutrema salsugineum19.3322.7991.493forward

Expression of CNT30233654

Peptides detected in this lncRNA

>peptide 1 (40 aa)
FGLQSHLSPAFKSLHGPLEFLARLRYIRALSSLYKGKRKP*

Sequence

>CNT30233654
TTTTGGTCTTCAATCCCATTTATCACCTGCTTTTAAATCATTACATGGGCCTTTAGAATTTCTGGCCCGTTTAAGATATATCAGGGCCTTATCCAGTTTA
TATAAGGGAAAGAGGAAACCCTAGCTATATGTAAGTTCAGCGAGCAGAGACGACGCATCTAAGTTCGGCGAATTCACCATGAGAGCCAAGTGGAAGAAGA
AGCGCATGAGGAGGTTGAAGAGGAAGCGCAGGAAGATGAGACAGAGATCTAAGTAGTCTGCGTCATCGTGCCTTATCCATAAATCTCTGTGATCCCTTTC
TTGTTTCTTGAACCCTTTATGTTTCTTGTTCTTACATTTAACGTTTCAAACAATCGTCTGTAGAACATGTTTTGCTCACTCCCTTTTATATCTATTACAA
GCAGAGATTTTATCTTATAATTTTCTGGATATTGTTATGTTCATTACAAGTTTTAGTGATTTAAATAATGGTCTAACTGTA