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Detailed information on CNT30399552


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Triticum turgidumEucalyptus grandis12.5824.6296.2580forward
CNT30549577Triticum turgidumIpomoea triloba12.2621.7993.5978reverse complement
CNT30514313Triticum turgidumJuglans regia12.7421.6693.8381forward
CNT30701352Triticum turgidumQuercus lobata12.7420.4593.8381forward
CNT30376000Triticum turgidumArabidopsis thaliana12.7421.6693.8381forward
CNT3071712Triticum turgidumQuercus suber12.7420.493.8381forward
CNT30506884Triticum turgidumNicotiana attenuata11.6429.7294.5974forward
CNT30191267Triticum turgidumSecale cereale32.086094.61204forward
CNT30306711Triticum turgidumTriticum aestivum83.3383.73100530forward
CNT30226789Triticum turgidumHordeum vulgare60.3876.0492.19384forward
CNT30442977Triticum turgidumAegilops tauschii44.8160.7794.04285forward
CNT30256571Triticum turgidumAvena sativa29.8731.190.53190forward
CNT30309894Triticum turgidumCamelina sativa12.2637.3293.5978forward
CNT30467175Triticum turgidumSaccharum spontaneum9.7526.598.3962forward
CNT3067939Triticum turgidumLeersia perrieri10.6923.6197.0668reverse complement
CNT30652446Triticum turgidumRosa chinensis12.4225.5793.6779forward
CNT30126894Triticum turgidumCorymbia citriodora12.5822.1693.7580forward
CNT30722856Triticum turgidumTriticum spelta60.0690.3199.74382forward
CNT30619768Triticum turgidumCajanus cajan12.583293.7580forward
CNT30572709Triticum turgidumVitis vinifera13.0528.0493.9883forward
CNT30704991Triticum turgidumPrunus avium12.7426.2195.0681forward
CNT3024248Triticum turgidumPopulus trichocarpa12.5825.0893.7580forward
CNT30175528Triticum turgidumVigna angularis12.4225.3293.6779forward
CNT30725207Triticum turgidumLupinus angustifolius12.4221.9493.6779forward

Expression of CNT30399552

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MYLLGMAAPFISSVNSFIPETCTLVGLLSLLLVVPGVLLS*

>peptide 2 (44 aa)
MAVVMACCSLLCVSLAAADCGCTCLAWRRHSSHLSTRLFQKPAL*

>peptide 3 (61 aa)
LTSPDPYSRSYLPRVSLLVTPQCAPLSPTTPHSLPQDRRRRRRRRRSSRREKEITRAGDRP*

>peptide 4 (58 aa)
MTDLPNRMNSVLELYLLLIFGHQVFYAFAGISIIVWMLLYVDYCCVWSLICWVMPPAS*

Sequence

>CNT30399552
GGCTAACAAGCCCAGACCCATATTCTCGAAGCTACCTTCCTAGGGTTTCGCTTCTTGTAACCCCCCAGTGCGCCCCCCTTTCTCCCACTACCCCCCACTC
CCTACCACAAGACCGCCGCCGCCGCAGGAGGAGGAGGAGAAGCAGCAGGCGCGAGAAGGAGATCACGCGAGCAGGCGACCGACCATGAGGGCCAAGTGGA
AGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCTGATGGCGGTGGTGATGGCGTGCTGTAGCTTGCTAT
GTGTGTCTTTGGCTGCGGCTGACTGCGGATGTACTTGCTTGGCATGGCGGCGCCATTCATCTCATCTGTCAACTCGTTTATTCCAGAAACCTGCACTTTA
GTAGGCCTGTTATCGTTGCTTTTAGTTGTACCAGGAGTTCTGCTATCATGACCGATCTACCGAACCGTATGAACTCTGTTTTGGAGCTTTATTTGCTGCT
AATATTCGGCCATCAAGTATTTTATGCTTTTGCTGGCATCAGCATTATTGTCTGGATGCTCTTATATGTTGATTACTGCTGCGTGTGGAGTTTGATTTGC
TGGGTGATGCCACCTGCTTCTTGATGGTTTAGGATT