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Detailed information on CNT3032717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Theobroma cacaoOryza sativa6.9822.3498.3661reverse complement
CNT30533222Theobroma cacaoEucalyptus grandis8.8123.6997.477forward
CNT30549577Theobroma cacaoIpomoea triloba8.9221.7994.8778reverse complement
CNT30514313Theobroma cacaoJuglans regia8.9220.8694.8778forward
CNT30506884Theobroma cacaoNicotiana attenuata8.1228.5197.1871forward
CNT30191267Theobroma cacaoSecale cereale9.0423.2496.279forward
CNT30224947Theobroma cacaoHordeum vulgare9.1527.2192.580forward
CNT30395161Theobroma cacaoTriticum turgidum9.3823.0392.6882forward
CNT30538793Theobroma cacaoBrassica napus9.0420.4793.6779forward
CNT30144286Theobroma cacaoMedicago truncatula8.4720.8594.5974reverse complement
CNT30467175Theobroma cacaoSaccharum spontaneum6.8625.6410060forward
CNT30608736Theobroma cacaoGossypium raimondii18.5428.4283.95162forward
CNT30219096Theobroma cacaoKalanchoe fedtschenkoi9.0422.5196.279forward
CNT3067939Theobroma cacaoLeersia perrieri7.6723.2698.5167reverse complement
CNT30652446Theobroma cacaoRosa chinensis8.724.693.4276forward
CNT30126894Theobroma cacaoCorymbia citriodora8.8121.3394.8177forward
CNT30721855Theobroma cacaoTriticum spelta9.3821.5892.6882forward
CNT30619768Theobroma cacaoCajanus cajan8.9231.294.8778forward
CNT30572709Theobroma cacaoVitis vinifera9.0426.6994.9479forward
CNT30704991Theobroma cacaoPrunus avium8.9225.2496.1578forward
CNT3024248Theobroma cacaoPopulus trichocarpa8.8124.1494.8177forward
CNT30725207Theobroma cacaoLupinus angustifolius8.9221.6794.8778forward

Expression of CNT3032717

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLGFYVLSCVDCVILKMLPKSEIENLMVFVYY*

Sequence

>CNT3032717
TCTTCTTCCTTTCCCCTTTCACGCTTCTTCATCTCCATGGGAGCCTCCCTTAAAGCTTCCATAGCTTTCTCTCTCTAGCTTCAATTTCATGCTTTTGAGC
ACTTGTTCATAGAACTATTTGTGCTCTTTCACTCTCTCACCTTAAAACCCTTAAAAAAGTCTTACTTCCATCTTCCTCTCACTAGCTGGACATGTAGAGA
GATAGAGTGATTTCCCTTGTTAGCTTGAAGAATTTTGAAAGAGAATTCAACTACAAAGACCATCAAGGTTCCAACAAGGCCTCACATGTCCATTTGGAGT
ATTAGTTGAGGTTAAAGTCAAGCAAAGGAATCAACAAGACCGGGATCGTCGGCCAATCGTAAAAGAAGGAGCTAATCCAAGATGAGAGCCAAGTGGAAGA
AGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCAAAGTAGGTGCATGGACACAGAAAAGATGGGCTTTACCCTGATATCCC
CTTGACTTTGCCATCATCATCCAGCATATATTGTATGAAGTTGTGAAGGTTGGAGGATGTTTTTTCGGGCAAGCTTATCTGTTCTGTCTTCTAATTTTAG
GTTAAGTTTTAAGACTATTTGAGGTGTTGTCTAGTACTACTAAATATTATGTTGGGCTTTTATGTTTTGAGCTGTGTAGACTGTGTTATCCTTAAAATGC
TTCCAAAAAGTGAAATTGAAAACTTAATGGTCTTTGTCTATTATTAGATAATTGGTTGTGTTACTATCGTCTTATATGTGAGATAGGTTGTTCCCCTACA
TTGTCAAGCATTCAGGATAAAATTTAACATGATGCAAACTGTTTTTGTATGTGTTTTTTAGAGGTCAGTGTTTT