Detailed information on CNT30549981


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Ipomoea trilobaOryza sativa16.0121.0490.9177forward
CNT30224947Ipomoea trilobaHordeum vulgare16.2226.5391.0378forward
CNT30395161Ipomoea trilobaTriticum turgidum16.2221.9191.0378forward
CNT30652446Ipomoea trilobaRosa chinensis16.2225.2494.8778forward
CNT30721855Ipomoea trilobaTriticum spelta16.2220.5391.0378forward

Expression of CNT30549981

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MNFSSQFSPVLMIHFEFSVLCTWESIFSLITSLKVFGKYIKHFYAFAIDFNHLRL*

Sequence

>CNT30549981
GCCCAACTACCTGGCCTTCACAGGACAGTAGTTAAAGTGCCTCTACTTGAAACCTAGTTTTTGTGTTGCTAGGGTTCTTTCTCAAAGCTACCGGGGTTGC
GTCTCTGCTTCTGTCGCCATGAGGGCCAAGTGGAAAAAGAAGAGAATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGACAAAGATCCAAGTAGAATG
GTTCGATAAATTCCAAAGAACAAAATTGGAGTAGTTTGTTTCCGTATGGTTAAGAGTCTTTAGAGTATGAACTTTAGTTCGCAATTCTCTCCTGTTTTGA
TGATACATTTTGAATTTTCAGTTTTATGCACTTGGGAGTCTATCTTTAGCTTAATTACGTCTCTGAAGGTTTTTGGCAAGTATATTAAACATTTTTATGC
ATTTGCTATTGATTTTAACCATTTGAGATTATAGGCAGTATCCTGATATTCTTACGTTCATTGGATGTGGTTTGATCCAAA