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Detailed information on CNT30626608


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Daucus carotaOryza sativa9.0621.0492.2177forward
CNT30533222Daucus carotaEucalyptus grandis9.0623.6993.5177forward
CNT30616211Daucus carotaSesamum indicum13.7623.5488.89117reverse complement
CNT3094050Daucus carotaSolanum tuberosum9.8821.0592.8684forward
CNT30224947Daucus carotaHordeum vulgare9.1826.5392.3178forward
CNT30395161Daucus carotaTriticum turgidum9.1821.9192.3178forward
CNT30538256Daucus carotaBrassica napus10.2421.0790.887forward
CNT30309894Daucus carotaCamelina sativa9.4138.2893.7580forward
CNT3078045Daucus carotaBrassica juncea9.2921.0192.4179forward
CNT30260341Daucus carotaBrassica rapa10.4722.3691.0189forward
CNT30137004Daucus carotaLolium perenne9.1833.3393.5978forward
CNT30652446Daucus carotaRosa chinensis8.9424.696.0576forward
CNT30721855Daucus carotaTriticum spelta9.1820.5392.3178forward
CNT30704991Daucus carotaPrunus avium9.1825.2494.8778forward
CNT3024248Daucus carotaPopulus trichocarpa9.0624.1492.2177forward
CNT30175528Daucus carotaVigna angularis8.9424.3694.7476forward
CNT30115231Daucus carotaEutrema salsugineum9.1821.1491.0378forward

Expression of CNT30626608

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNGKSTYSIPWNGRRQYPMFLSVQYPHFR*

>peptide 2 (30 aa)
MESPPILFPGMAGDNIQCSYLFNIPIFVDFQ

>peptide 3 (38 aa)
MRGVFTHPTTLCIEESIYFGCLVLQLWLVNIKVLYVLF*

>peptide 4 (82 aa)
MILPLSLASIDSESCVVFVYLLLFSRLIPYNFDLLINGALFTWIIIVLRFIHLDSCFLSVLVAYILFQFESICVLFVNSYFC*

Sequence

>CNT30626608
AGGAATTACTGTTAATAGTTAGAGCAGGTCGCATTTGCGCACTATAAATTGATCACTATCAGGCTGCTACTATTCTTTCGTTTCGCCGCAACCTCATAAT
TAGGGTTTCACAAGCAGAGTGAGAGGCTAAGCAAATTTCAAAGCAATCAGAATGAGGGCCAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGGAAGC
GACGAAAGATGAGACAGAGATCCAAGTAGATGATTGATAATGATTCTACCTCTCTCTTTAGCTTCCATTGATTCAGAATCCTGTGTTGTTTTTGTTTATC
TACTTTTGTTTTCAAGATTGATACCTTATAATTTTGATTTGCTTATCAATGGAGCTTTATTTACCTGGATAATTATTGTGTTGCGTTTCATTCATTTAGA
TTCATGTTTCCTCAGCGTTTTAGTTGCTTATATCTTATTTCAGTTTGAATCTATCTGCGTGTTATTTGTGAATTCCTATTTTTGTTAGAAATGAGGGGTG
TTTTTACACATCCGACCACCCTTTGTATCGAAGAAAGTATATACTTCGGCTGTCTTGTGCTACAACTTTGGCTCGTAAACATAAAAGTACTGTACGTGCT
TTTTTGAAAAGATCGGGCTCGGGTTATTGGAAGAATCTTATGAATTCAGTTTCTATTAGCTTTGATAGTTGGGAGGGGAATATAATTCCAAGGCCTTAGA
TGGAAGGAATGAAACCCTCTTCACCCTTTACTTCCATCGAATCAGAGTAGTATGAATGGAAAGTCCACCTATTCTATTCCCTGGAATGGCAGGAGACAAT
ATCCAATGTTCCTATCTGTTCAATATCCCCATTTTCGTTGATTTTCAGCT