« Back to Gossypium raimondii search


Detailed information on CNT30610456


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Gossypium raimondiiEucalyptus grandis8.8225.2395.1282forward
CNT30317675Gossypium raimondiiCorylus avellana8.629.7492.580forward
CNT30701352Gossypium raimondiiQuercus lobata9.1421.4692.9485forward
CNT3071712Gossypium raimondiiQuercus suber9.1421.4192.9485forward
CNT30538793Gossypium raimondiiBrassica napus8.9221.593.9883forward
CNT30652446Gossypium raimondiiRosa chinensis8.7126.2191.3681forward
CNT30126894Gossypium raimondiiCorymbia citriodora8.622.169580forward
CNT30429165Gossypium raimondiiPapaver somniferum9.4624.7992.0588forward
CNT30704991Gossypium raimondiiPrunus avium8.9226.8696.3983forward
CNT30175528Gossypium raimondiiVigna angularis8.7125.9696.381forward
CNT30115234Gossypium raimondiiEutrema salsugineum9.1420.8392.9485forward

Expression of CNT30610456

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MLITNEFHTTKMHFFKFQRHYVCGYPCYSWNFLSVQGFRFFFLFCSIHGLFPSSFFLIPQSWLTRP

>peptide 2 (55 aa)
TIFIRSQIKIPKSLRFSPTFCYIVVRLRKGSSRKSGRDSTKKKEPVTPSSDRCRW*

>peptide 3 (44 aa)
MFVDTLAIHGIFFLCKVSGFFSCSVLFTAFSPVASFSSLRAGLLA

Sequence

>CNT30610456
CACCATTTTTATTAGGTCCCAAATCAAAATCCCCAAATCCCTTAGATTTTCCCCGACCTTCTGCTACATCGTCGTTCGGCTGAGAAAGGGGAGTTCTAGG
AAATCTGGTCGCGATTCGACTAAGAAGAAAGAGCCTGTGACACCTAGTAGTGATAGGTGTAGATGGTAAAAGTCCTTGCCAGCAATTGATTGCCGCCTCT
GCATCCGGCTAGGGTTTAATGAATAACCAAGAAGGCGACATCAAGTTTCCTTTTATCCTATCACCATGAGTGCCAAGTGGAAGAAGAAGCGCATGAGAAG
ATTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGATAGAACCATCAGCCCCTCTATTATACGAGGTTTCTCAATGTCTTAGCTAATATCGG
TGTACTTTTAGGGTCCACTTAGTTATCTGCCATTTTTATTTTAGTTTTAAGCTTTTTTTTTTCTCTTGGGTTTCTATTGTCTTTCAAGTTGGTGCTAATC
CGACAGTGGGATGATGTATCATTGTTAAGATTGGAGTTTAATTTGAATTTTCTCTTATAGTCTCCAATATAATAAAAAAATTTCTCTGCTAGTCTCCAGT
ATAATAGAAAGAACCCTAGTAAATCGACGTGTTTTCATGGGTAAACTAGCGAGAGCTAAAATGTTAAGATGATTGGGAGACTGAAACAGATGAATTAGAA
ATACAGAAAAAGCAGCAATAGCAGTAAATGGTATGCTAATTACCAACGAATTTCATACAACAAAGATGCATTTCTTTAAATTTCAACGTCACTATGTTTG
TGGATACCCTTGCTATTCATGGAATTTTCTTTCTGTGCAAGGTTTCAGGTTTTTTTTCCTGTTCTGTTCTATTCACGGCCTTTTCCCCAGTAGCTTCTTT
CTCATCCCTCAGAGCTGGCTTACTCGCCCG