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Detailed information on CNT30307634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Triticum aestivumOryza sativa12.0521.0493.5177forward
CNT30533222Triticum aestivumEucalyptus grandis12.5224.6296.2580forward
CNT30549577Triticum aestivumIpomoea triloba12.2121.7993.5978reverse complement
CNT30514313Triticum aestivumJuglans regia12.6821.6693.8381forward
CNT30701352Triticum aestivumQuercus lobata12.6820.4593.8381forward
CNT30376000Triticum aestivumArabidopsis thaliana12.6821.6693.8381forward
CNT3071712Triticum aestivumQuercus suber12.6820.493.8381forward
CNT30506884Triticum aestivumNicotiana attenuata11.5829.7294.5974forward
CNT30191267Triticum aestivumSecale cereale31.1458.5394.97199forward
CNT30443372Triticum aestivumAegilops tauschii48.8393.1399.68312forward
CNT30256571Triticum aestivumAvena sativa25.3526.5195.06162forward
CNT30309894Triticum aestivumCamelina sativa12.2137.3293.5978forward
CNT30467175Triticum aestivumSaccharum spontaneum9.726.598.3962forward
CNT30137004Triticum aestivumLolium perenne12.5234.1993.7580forward
CNT30219096Triticum aestivumKalanchoe fedtschenkoi12.2122.2294.8778forward
CNT3067939Triticum aestivumLeersia perrieri10.6423.6197.0668reverse complement
CNT30652446Triticum aestivumRosa chinensis12.3625.5793.6779forward
CNT30126894Triticum aestivumCorymbia citriodora12.5222.1693.7580forward
CNT30723054Triticum aestivumTriticum spelta56.9673.24100364forward
CNT30619768Triticum aestivumCajanus cajan12.523293.7580forward
CNT30572709Triticum aestivumVitis vinifera12.9928.0493.9883forward
CNT30704991Triticum aestivumPrunus avium12.6826.2195.0681forward
CNT3024248Triticum aestivumPopulus trichocarpa12.5225.0893.7580forward
CNT30175528Triticum aestivumVigna angularis12.3625.3293.6779forward
CNT30725207Triticum aestivumLupinus angustifolius12.3621.9493.6779forward

Expression of CNT30307634

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTNLSNRMNSVLELYLLLILGHQVLHAFACINIIV*

>peptide 2 (88 aa)
RLTSSGPYSRSYLPRVSLLVTPQCAPLSPTSPTPHHKTAAAAGGGGEAAGARRRSREEATDHEGQVEEEAHEEAEEEAPKDEAAIQVG*

>peptide 3 (61 aa)
MEVVMACCSLQCVSFAAADCRHTCLAFWRHSSHLSTSLIPETCTLVGLLSMLLVVSGVLLS*

>peptide 4 (32 aa)
MLLLVSTLLSECSYLLRVEFDLLGDATCFLMV*

Sequence

>CNT30307634
CGGCTAACAAGCTCAGGCCCATATTCTCGAAGCTACCTTCCTAGGGTTTCGCTTCTTGTAACCCCCCAGTGCGCCCCCCTTTCTCCCACTTCCCCCACTC
CCCACCACAAGACCGCCGCCGCCGCAGGAGGAGGAGGAGAAGCAGCAGGCGCGAGAAGGAGATCTCGCGAGGAGGCGACCGACCATGAGGGCCAAGTGGA
AGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCTGATGGAGGTGGTGATGGCGTGCTGTAGCTTGCAAT
GTGTGTCTTTCGCTGCGGCTGACTGCAGGCATACTTGCTTGGCATTTTGGCGCCATTCTTCTCATCTGTCAACTTCGCTTATTCCAGAAACCTGCACTTT
AGTAGGCCTGTTATCGATGCTTTTAGTTGTATCAGGAGTTTTGCTATCATGACCAATCTATCGAACCGTATGAACTCTGTTTTGGAGCTTTATTTGCTGC
TAATACTCGGCCATCAAGTACTTCATGCTTTTGCTTGTATCAACATTATTGTCTGAATGCTCTTATCTGCTGCGTGTAGAGTTTGATTTGCTGGGTGATG
CTACCTGCTTCTTGATGGTTTAGGATTAGGATTTTGATC