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Detailed information on CNT3024248


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Populus trichocarpaOryza sativa24.1419.392.2177forward
CNT30675831Populus trichocarpaSetaria viridis25.0814.7393.7580forward
CNT30523531Populus trichocarpaSetaria italica25.0811.6693.7580forward
CNT30533222Populus trichocarpaEucalyptus grandis25.7125.2397.5682forward
CNT30318276Populus trichocarpaCorylus avellana25.397.8696.381forward
CNT30547713Populus trichocarpaIpomoea triloba24.459.0997.4478forward
CNT30701463Populus trichocarpaQuercus lobata25.7115.8997.5682forward
CNT30500546Populus trichocarpaCoffea canephora24.7617.0694.9479forward
CNT30278460Populus trichocarpaChenopodium quinoa25.7113.1896.3482forward
CNT3070099Populus trichocarpaQuercus suber25.7114.7297.5682forward
CNT30404042Populus trichocarpaBeta vulgaris24.4516.2597.4478forward
CNT30526086Populus trichocarpaPhaseolus vulgaris25.7115.3695.1282forward
CNT30628518Populus trichocarpaVigna unguiculata25.718.1596.3482forward
CNT30199009Populus trichocarpaPisum sativum24.1414.596.177forward
CNT30494259Populus trichocarpaOlea europaea25.0815.8797.580forward
CNT30506885Populus trichocarpaNicotiana attenuata25.7115.1397.5682forward
CNT30712442Populus trichocarpaGlycine max25.714.8996.3482forward
CNT3043428Populus trichocarpaPrunus dulcis24.4517.4196.1578forward
CNT30163346Populus trichocarpaPistacia vera24.1411.6397.477forward
CNT30638745Populus trichocarpaCapsicum annuum25.7116.1196.3482forward
CNT3094527Populus trichocarpaSolanum tuberosum25.7115.7196.3482forward
CNT30307634Populus trichocarpaTriticum aestivum25.0812.5293.7580forward
CNT30227210Populus trichocarpaHordeum vulgare25.0817.7493.7580forward
CNT30399552Populus trichocarpaTriticum turgidum25.0812.5893.7580forward
CNT3085655Populus trichocarpaVigna radiata25.7117.1295.1282forward
CNT30541757Populus trichocarpaBrassica napus25.3913.2192.5981forward
CNT30233654Populus trichocarpaBrassica oleracea25.7117.0592.6882forward
CNT30172276Populus trichocarpaTrifolium pratense24.1415.9196.177forward
CNT30145007Populus trichocarpaMedicago truncatula22.2611.9597.1871forward
CNT30442977Populus trichocarpaAegilops tauschii2114.2994.0367forward
CNT30242945Populus trichocarpaAvena sativa24.1411.6192.2177forward
CNT30313662Populus trichocarpaCamelina sativa24.1416.7493.5177forward
CNT3060340Populus trichocarpaArabidopsis lyrata24.4515.8592.3178forward
CNT30260384Populus trichocarpaBrassica rapa25.717.3691.4682forward
CNT30601041Populus trichocarpaFraxinus excelsior25.0814.3496.2580forward
CNT30468162Populus trichocarpaSaccharum spontaneum25.0810.939580forward
CNT30132841Populus trichocarpaLolium perenne24.1414.8192.2177forward
CNT30608736Populus trichocarpaGossypium raimondii24.1413.5197.477forward
CNT30217757Populus trichocarpaKalanchoe fedtschenkoi24.1419.297.477forward
CNT30652446Populus trichocarpaRosa chinensis25.7126.5493.982forward
CNT30213082Populus trichocarpaHelianthus annuus25.7118.2693.982forward
CNT30715353Populus trichocarpaMalus domestica golden25.396.5996.381forward
CNT30626608Populus trichocarpaDaucus carota24.149.0692.2177forward
CNT30722856Populus trichocarpaTriticum spelta25.0818.9193.7580forward
CNT30348934Populus trichocarpaEragrostis tef213.7995.5267reverse complement
CNT30479698Populus trichocarpaArabidopsis halleri24.1416.8193.5177forward
CNT30619791Populus trichocarpaCajanus cajan25.0830.429580forward
CNT30596688Populus trichocarpaOryza meridionalis25.0814.849580forward
CNT30355299Populus trichocarpaLactuca sativa25.7111.893.982forward
CNT30154619Populus trichocarpaPrunus persica24.4519.2196.1578forward
CNT30423745Populus trichocarpaPapaver somniferum24.1416.0494.8177forward
CNT30704989Populus trichocarpaPrunus avium26.0210.9196.3983forward
CNT3032717Populus trichocarpaTheobroma cacao24.148.8194.8177forward
CNT3057178Populus trichocarpaAmborella trichopoda24.1413.3492.2177reverse complement
CNT30120214Populus trichocarpaCitrus clementina25.7115.9896.3482forward
CNT3038456Populus trichocarpaCucumis melo24.7615.892.4179forward
CNT30584684Populus trichocarpaEchinochloa crusgalli25.0816.7493.7580forward
CNT30499031Populus trichocarpaDigitaria exilis24.1414.3992.2177forward
CNT30593864Populus trichocarpaEragrostis curvula24.1413.892.2177forward
CNT30604511Populus trichocarpaOryza punctata25.0815.3693.7580forward
CNT30174981Populus trichocarpaVigna angularis25.7116.6796.3482forward
CNT30556718Populus trichocarpaPanicum hallii24.1417.1992.2177forward
CNT30112246Populus trichocarpaFicus carica26.0214.8795.1883forward
CNT30723374Populus trichocarpaLupinus angustifolius25.399.1795.0681forward
CNT3048749Populus trichocarpaCucumis sativus24.7615.2292.4179forward
CNT30115398Populus trichocarpaEutrema salsugineum24.4515.9292.3178forward

Expression of CNT3024248

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRAKWKKKRMRRLKRKRRKMRQRSKYGLLGKKLSEIIFRKCSLPILGITEDAGICD*

Sequence

>CNT3024248
TAAACGTAGCAGCTCTCTCTATCATTCTCCGCTGCCTCTAGGATTCTGAATCAAAAGAAAGAAGGAACACAGAGCTTGGATACTTTGTCACCATGAGAGC
CAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAAAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTATGGATTACTAGGGAAGAAGTTATCAGAAATA
ATTTTTCGCAAGTGCTCTTTGCCAATCTTGGGAATTACCGAGGATGCTGGAATCTGTGATTAACTTGGTGCTGCAATGATTCAGTATGGGGAGGATGAGA
GGATACCCTGATTTTAATG