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Detailed information on CNT30389985


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 1e-113

BLAST vs NONCODE:
NONPOPT000587, E-value = 9e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Triticum turgidumSetaria viridis46.2159.1987.87470forward
CNT30520816Triticum turgidumSetaria italica50.9359.9586.87518forward
CNT30641080Triticum turgidumNymphaea colorata26.1629.7286.09266forward
CNT30549537Triticum turgidumIpomoea triloba30.5846.782.64311forward
CNT30515028Triticum turgidumJuglans regia25.2730.2782.49257forward
CNT30698521Triticum turgidumQuercus lobata26.4547.9582.53269forward
CNT30373104Triticum turgidumArabidopsis thaliana48.2858.5280.24491forward
CNT30618114Triticum turgidumSesamum indicum21.1447.5782.33215forward
CNT30266729Triticum turgidumChenopodium quinoa30.2923.8986.04308forward
CNT3021108Triticum turgidumCitrullus lanatus44.1527.2885.75449forward
CNT30729630Triticum turgidumCorchorus capsularis39.4348.9682.54401forward
CNT30381460Triticum turgidumManihot esculenta51.0356.4783.24519forward
CNT30402638Triticum turgidumBeta vulgaris48.5738.5684.41494forward
CNT30524850Triticum turgidumPhaseolus vulgaris30.4842.9483.87310forward
CNT30628634Triticum turgidumVigna unguiculata32.9446.5383.58335forward
CNT30194995Triticum turgidumPisum sativum20.1621.5383.9205forward
CNT30490001Triticum turgidumOlea europaea11.1122.7884.96113forward
CNT30712616Triticum turgidumGlycine max24.3930.586.29248forward
CNT3047443Triticum turgidumPrunus dulcis22.1218.8684225forward
CNT30158121Triticum turgidumPistacia vera17.628.6488.27179forward
CNT30638840Triticum turgidumCapsicum annuum23.0127.486.75234forward
CNT3090332Triticum turgidumSolanum tuberosum18.7829.3886.91191forward
CNT30181754Triticum turgidumSecale cereale29.447.5497.99299forward
CNT30294498Triticum turgidumTriticum aestivum40.7151.8199.76414forward
CNT30225924Triticum turgidumHordeum vulgare40.6173.3688.14413forward
CNT30561874Triticum turgidumActinidia chinensis40.1246.2684.07408forward
CNT30508545Triticum turgidumSolanum lycopersicum13.4733.0983.94137forward
CNT30172560Triticum turgidumTrifolium pratense26.1639.0682.71266forward
CNT30144304Triticum turgidumMedicago truncatula30.7848.6883.39313forward
CNT30437887Triticum turgidumAegilops tauschii67.6598.2998.98688forward
CNT30662024Triticum turgidumTriticum dicoccoides18.8837.8100192forward
CNT30471290Triticum turgidumSaccharum spontaneum46.3152.4587.69471forward
CNT3013982Triticum turgidumZea mays23.783.185.89241forward
CNT30608385Triticum turgidumGossypium raimondii33.2461.4583.73338forward
CNT30218287Triticum turgidumKalanchoe fedtschenkoi29.758.1982.78302forward
CNT3066706Triticum turgidumLeersia perrieri20.2660.5984.47206forward
CNT30650282Triticum turgidumRosa chinensis27.6323.8583.99281forward
CNT30624603Triticum turgidumDaucus carota29.9946.2186.23305forward
CNT30681758Triticum turgidumTriticum urartu34.9152.0599.15355forward
CNT30349162Triticum turgidumEragrostis tef44.3549.5186.47451forward
CNT30477100Triticum turgidumArabidopsis halleri13.9635.9583.8142forward
CNT30368062Triticum turgidumSorghum bicolor35.5932.9487.85362forward
CNT30620815Triticum turgidumCajanus cajan17.0123.6783.82173forward
CNT30597069Triticum turgidumOryza meridionalis45.3323.0485.9461forward
CNT30358838Triticum turgidumLactuca sativa16.4224.4282.63167forward
CNT30420528Triticum turgidumPapaver somniferum30.5816.3281.67311forward
CNT30571189Triticum turgidumVitis vinifera17.3128.5788.07176forward
CNT3055164Triticum turgidumAmborella trichopoda27.4324.2683.87279forward
CNT3022562Triticum turgidumPopulus trichocarpa48.8731.7883.7497forward
CNT3035650Triticum turgidumCucumis melo46.835.3183.4476forward
CNT30331991Triticum turgidumDioscorea rotundata20.0643.1382.35204forward
CNT30101941Triticum turgidumOryza rufipogon30.5837.2586.17311forward
CNT30496713Triticum turgidumDigitaria exilis30.5820.6587.14311forward
CNT30174546Triticum turgidumVigna angularis15.5420.6585.44158forward
CNT30113329Triticum turgidumFicus carica27.8326.2886.57283forward
CNT30725315Triticum turgidumLupinus angustifolius48.5749.1185.43494forward

Expression of CNT30389985

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MLLEVRSNLIIGDSLIMLGGDQNSVHTYRNHGTSLVEVFNRDLGFAIRP*

>peptide 2 (83 aa)
MTKRPDGFKWNMVFSSRYFSGITGLMTCSLRSAAISSLVTVSSCWVEIRTVCTRTGTMAPPSLRYSTVTWVLPSGLSQAQVPFL

>peptide 3 (58 aa)
CTDKNRTTLSLKLNIEKVKTAPSIENWEEQGTRITYGFTDAVLKNNWIEETAQVLRFQ*

>peptide 4 (71 aa)
MLKPCFLLKRRNSIIQDTTTSGSSRNDRLLHTHVSSRGLVKLEGLHNLPGLKSKFSFTILRISLSGILPVP*

Sequence

>CNT30389985
CTGCACTGACAAAAACCGCACTACCTTATCGCTCAAACTGAATATCGAAAAGGTTAAGACTGCACCAAGCATCGAGAATTGGGAAGAACAGGGTACTAGG
ATCACATATGGTTTTACAGATGCAGTACTAAAAAATAACTGGATAGAGGAAACCGCACAAGTACTGCGGTTTCAGTAGACTCAAAAAGCAAAAACAAAGC
ACAGAAGACATCAAAAGACCCGACTAGTATTAACTCAGCACATATTTCTGTATGCCATACCAAAATACCAATCACTAGACGCCAATTCAGCGTGTCCACG
GCGATGTTGAAACCCTGCTTCCTTCTAAAGAGAAGGAATTCAATTATCCAAGATACAACCACCAGCGGCAGCAGCAGGAATGATAGACTCCTTCATACCC
ACGTCTCAAGCAGAGGCCTTGTCAAACTTGAGGGGCTTCACAACCTCCCAGGCCTGAAGTCAAAGTTCTCCTTCACAATCTTGAGGATCTCCTTATCGGG
GATCTTGCCAGTACCATAAGAGTCAACGAAGACAGATAAGGGCTCAGGCACACCAATGGCGTAGGAGATCTGAACAATGCAGCGGCGTGCAAGACCGCTA
GCAATGATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCGCCACTGCGGTCAACCTTAGTTGGGTCCTTGCCGGAGAAAGCACCACCTCCGTGTGCTCCCC
AGCCACCATAGGTGTCGATGATGATCTTGCGACCAGTAAGACCAGCATCACCATGAGGGCCACCAATGACAAAGCGGCCTGATGGATTCAAGTGGAATAT
GGTCTTCTCGTCCAGGTACTTCTCAGGGATCACCGGCTTGATGACATGCTCCTTGAGGTCCGCAGCAATCTCATCATTGGTGACAGTCTCATCATGCTGG
GTGGAGATCAGAACAGTGTGCACACGTACAGGAACCATGGCACCTCCCTCGTTGAGGTATTCAACCGTGACCTGGGTTTTGCCATCAGGCCTTAGCCAGG
CACAAGTGCCATTCTTG