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Detailed information on CNT30402638


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4H1G4|METK1_BETVU, E-value = 4e-169

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Beta vulgarisSetaria viridis32.4753.6886.06416forward
CNT30520816Beta vulgarisSetaria italica36.6954.485.32470forward
CNT30641080Beta vulgarisNymphaea colorata21.7831.1786.02279forward
CNT30549907Beta vulgarisIpomoea triloba19.9847.6785.55256forward
CNT30515028Beta vulgarisJuglans regia31.4647.4786.6403forward
CNT30698521Beta vulgarisQuercus lobata22.8752.2382.94293forward
CNT30373104Beta vulgarisArabidopsis thaliana29.5945.1784.96379forward
CNT30618114Beta vulgarisSesamum indicum17.2548.8982.35221forward
CNT3021108Beta vulgarisCitrullus lanatus36.3828.3186.7466forward
CNT30729630Beta vulgarisCorchorus capsularis27.3242.7483.71350forward
CNT30381460Beta vulgarisManihot esculenta47.4666.1685.03608forward
CNT30524850Beta vulgarisPhaseolus vulgaris28.2650.1486.19362forward
CNT30628634Beta vulgarisVigna unguiculata55.6699.0384.15713forward
CNT30194995Beta vulgarisPisum sativum16.3221.9588.04209forward
CNT30712018Beta vulgarisGlycine max26.4663.8487.91339forward
CNT3047443Beta vulgarisPrunus dulcis29.4331.688.59377forward
CNT30158121Beta vulgarisPistacia vera26.4654.2485.55339forward
CNT30638840Beta vulgarisCapsicum annuum18.2727.486.32234forward
CNT3090332Beta vulgarisSolanum tuberosum21.8643.0885280forward
CNT30188757Beta vulgarisSecale cereale34.1198.6583.98437forward
CNT30294498Beta vulgarisTriticum aestivum27.7944.5685.96356forward
CNT30225924Beta vulgarisHordeum vulgare27.7963.2384.27356forward
CNT30389985Beta vulgarisTriticum turgidum38.5648.5784.41494forward
CNT30561874Beta vulgarisActinidia chinensis27.5640.0284.14353forward
CNT30508545Beta vulgarisSolanum lycopersicum14.3644.4484.78184forward
CNT30172560Beta vulgarisTrifolium pratense23.7344.6483.88304forward
CNT30144304Beta vulgarisMedicago truncatula31.4662.6787.59403forward
CNT30437887Beta vulgarisAegilops tauschii25.7647.1485.76330forward
CNT30662024Beta vulgarisTriticum dicoccoides29.3574.0283.51376forward
CNT3082721Beta vulgarisBrassica juncea17.4977.5183.04224forward
CNT30471290Beta vulgarisSaccharum spontaneum31.344.6586.28401forward
CNT3013982Beta vulgarisZea mays21.0893.187.04270forward
CNT30608385Beta vulgarisGossypium raimondii23.7355.2783.88304forward
CNT3066706Beta vulgarisLeersia perrieri10.3839.1286.47133forward
CNT30650534Beta vulgarisRosa chinensis28.3438.9584.85363forward
CNT30212612Beta vulgarisHelianthus annuus10.4655.687.31134forward
CNT30626924Beta vulgarisDaucus carota27.3227.7684.86350forward
CNT30686785Beta vulgarisTriticum urartu34.8244.1685.2446forward
CNT30349162Beta vulgarisEragrostis tef34.8248.9685.2446forward
CNT30477100Beta vulgarisArabidopsis halleri13.6644.382.86175forward
CNT30368062Beta vulgarisSorghum bicolor23.1126.9388.51296forward
CNT30620812Beta vulgarisCajanus cajan29.4330.3582.49377forward
CNT30597069Beta vulgarisOryza meridionalis32.7920.9986.67420forward
CNT30358838Beta vulgarisLactuca sativa19.5936.783.27251forward
CNT30429132Beta vulgarisPapaver somniferum46.2137.3382.26592forward
CNT30571189Beta vulgarisVitis vinifera26.3954.8786.98338forward
CNT3055164Beta vulgarisAmborella trichopoda31.3834.9683.33402forward
CNT3022562Beta vulgarisPopulus trichocarpa52.6243.0983.83674forward
CNT3035650Beta vulgarisCucumis melo38.3336.4286.15491forward
CNT30331991Beta vulgarisDioscorea rotundata18.1149.0582.76232forward
CNT30101941Beta vulgarisOryza rufipogon20.6131.6287.12264forward
CNT30496713Beta vulgarisDigitaria exilis20.3717.3382.76261forward
CNT30174554Beta vulgarisVigna angularis35.1362.6785.56450forward
CNT30725315Beta vulgarisLupinus angustifolius43.0954.8786.78552forward

Expression of CNT30402638

Peptides detected in this lncRNA

>peptide 1 (54 aa)
ISSNSFTNKCCNFYYQQKLPIPIISNSSTSNQLTPNKETIKKGKQGHKCNPSYY*

>peptide 2 (52 aa)
MAIIPGLKSKGSFQFRRCQRRRTKALGHRWRKRSGQCSGEQGHWQQCSWLPA*

>peptide 3 (91 aa)
MAEGHQFWGLISGIAKHVTLVTSTDLLRTLGKMTVDTLGNVRTLLLNVNQDLAVASIKHCIRDLIAHLVGVSLVHRFRGEKEGVNWGGHFSS

>peptide 4 (51 aa)
MTKRPDGLRWKMVFSSRYFSGITGLITCSFKSAAISSLVTVSSCWVEMRTV*

Sequence

>CNT30402638
ATATAAGCAGCAACTCCTTTACTAACAAATGCTGCAACTTCTACTACCAACAAAAACTCCCAATACCCATAATATCTAACTCTTCCACAAGTAACCAACT
CACCCCAAACAAAGAAACTATAAAAAAGGGAAAGCAAGGACACAAGTGTAACCCATCATACTACTAAAAAGCATCATACATTTCATTTGGTTAGAGAGCA
GCTGCAGCCTGTGGAGGAGATCCGGGCACTTGCTTTATTGATCAAAAATATTAATCAATGAATTCCGACTTCACTCTTTCTCTGACTTAAGCTTGGGGCT
TGTCCCACTTGAGGGGCTTCACAACCTCCCATGTGAAGTCTGGGTCATCCCTACCGAAGTGTCCGTAAGCAGCGGTCTTCAAGTACCTGCTGCCACCCTT
GAGAAGGTCAAGGTTGATGGCGATCATACCGGGCCTGAAGTCGAAGGGATCTTTCCAGTTCCGTAGGTGTCAACGAAGACGGACAAAGGCTCTGGGACAC
CGATGGCGTAAGAGATCTGGACAATGCAGCGGCGAGCAAGGCCACTGGCAACAATGCTCTTGGCTGCCTGCCTAGCAATGTAAGCACCACTCCTGTCAAC
CTTGGTTGGGTCCTTTCCGGAGAAGGCACCACCACCGTGAGCACCCCAACCTCCGTAGGTGTCGATGATGATCTTACGACCAGTAAGACCAGCATCACCG
TGAGGTCCACCAATGACGAAACGGCCAGATGGGTTAAGGTGGAAGATGGTCTTCTCATCAAGGTACTTCTCAGGGATCACAGGCTTGATCACGTGCTCCT
TCAAGTCAGCTGCAATCTCGTCGTTGGTAACAGTTTCATCGTGCTGGGTTGAGATGAGGACGGTGTGAACACGGATGGGAACCATGGCACCGTTGTCATT
GTAGTACTCAACAGTGACTTGGGTCTTGCCATCAGGCCTCAACCATGGGCAGGTACCGTTCTTGCGAACCTCAGTGAGACGGGCACCAAGCTTGGTGGCG
AGGACATGGCTGAGGGGCATCAATTCTGGGGTCTCATCAGTGGCATAGCCAAACATGTGACCCTGGTCACCAGCACCGATCTCCTCAGGACGCTTGGTAA
GATGACCGTGGACACCCTGGGCAATGTCAGGACTCTGCTGCTCAATGTAAACCAAGACCTTGCAGTTGCAAGCATCAAGCACTGCATCAGAGATCTGATC
GCACATCTTGTCGGGGTGTCCCTCGTTCACAGATTCAGAGGTGAAAAGGAAGGTGTCAATTGGGGCGGCCATTTTTCAAGC