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Detailed information on CNT30571189


BLAST search results

BLAST vs Swiss-Prot:
sp|A7Q0V4|METK5_VITVI, E-value = 8e-134

BLAST vs NONCODE:
NONPOPT000587, E-value = 8e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520816Vitis viniferaSetaria italica29.8721.390.22184forward
CNT30549907Vitis viniferaIpomoea triloba2528.6887.01154forward
CNT30698521Vitis viniferaQuercus lobata24.0326.3891.22148forward
CNT30374815Vitis viniferaArabidopsis thaliana61.291.2882.76377forward
CNT30266655Vitis viniferaChenopodium quinoa43.8324.0288.15270forward
CNT3021108Vitis viniferaCitrullus lanatus31.9811.9785.79197forward
CNT30381493Vitis viniferaManihot esculenta32.3126.5788.44199forward
CNT30402638Vitis viniferaBeta vulgaris54.8726.3986.98338forward
CNT30524807Vitis viniferaPhaseolus vulgaris31.9822.3488.83197forward
CNT30628634Vitis viniferaVigna unguiculata50.3243.0684.84310forward
CNT30194995Vitis viniferaPisum sativum30.5219.7584.04188forward
CNT30495282Vitis viniferaOlea europaea36.212.6684.3223forward
CNT30158121Vitis viniferaPistacia vera97.0895.6889.63598forward
CNT3090332Vitis viniferaSolanum tuberosum43.5141.2387.69268forward
CNT30294498Vitis viniferaTriticum aestivum50.9739.384.08314forward
CNT30225924Vitis viniferaHordeum vulgare27.630.288.82170forward
CNT30389985Vitis viniferaTriticum turgidum28.5717.3188.07176forward
CNT3086110Vitis viniferaVigna radiata20.7811.4584.38128forward
CNT30508545Vitis viniferaSolanum lycopersicum14.9422.2289.1392forward
CNT30174161Vitis viniferaTrifolium pratense37.0128.985.53228forward
CNT30437887Vitis viniferaAegilops tauschii28.5725.1488.64176forward
CNT3082721Vitis viniferaBrassica juncea28.2560.2186.78174forward
CNT30471290Vitis viniferaSaccharum spontaneum29.8720.4991.85184forward
CNT30608385Vitis viniferaGossypium raimondii27.4430.7389.35169forward
CNT30218287Vitis viniferaKalanchoe fedtschenkoi18.3421.7789.38113forward
CNT30650534Vitis viniferaRosa chinensis67.3744.5387.71415forward
CNT30212612Vitis viniferaHelianthus annuus34.0987.1486.67210forward
CNT30624603Vitis viniferaDaucus carota55.1951.5285.88340forward
CNT30681758Vitis viniferaTriticum urartu49.3544.5784.21304forward
CNT30349160Vitis viniferaEragrostis tef48.0531.9387.16296forward
CNT30477100Vitis viniferaArabidopsis halleri16.8826.3386.54104forward
CNT30368062Vitis viniferaSorghum bicolor26.6214.9291.46164forward
CNT30597069Vitis viniferaOryza meridionalis29.879.290.76184forward
CNT30358838Vitis viniferaLactuca sativa30.5227.4984.04188forward
CNT30421092Vitis viniferaPapaver somniferum35.3932.6383.49218forward
CNT3055182Vitis viniferaAmborella trichopoda27.616.0885.29170forward
CNT3022365Vitis viniferaPopulus trichocarpa65.9179.9287.68406forward
CNT3035650Vitis viniferaCucumis melo37.1816.9988.65229forward
CNT30331991Vitis viniferaDioscorea rotundata18.5124.185.09114forward
CNT30148817Vitis viniferaBrachypodium distachyon44.1623.5384.93272forward
CNT30101810Vitis viniferaOryza rufipogon46.5911.3283.62287forward
CNT30116702Vitis viniferaOryza nivara25.1615.0981.29155forward
CNT30113343Vitis viniferaFicus carica30.8453.6786.32190forward

Expression of CNT30571189

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MAQRHKFRGLISGITKHVALVTSTNFLWALGKMTVNTLGNIRALLLNVDQDFAVISIKTHIIRDKSNGAACVTDNLLIVYI

>peptide 2 (47 aa)
TTSVHLGRVLARESTTTMGSPATVSVNDDFPSSETSITVRATNDKAA*

>peptide 3 (31 aa)
MLTRTLQLSASRPTSSETNPMVRHVSRTIFS*

>peptide 4 (52 aa)
MTKRPDGLRWKMVFSSRYFSGMTVSSCWVEMRTVCTRRGTMAPFSLWYSTVT*

>peptide 5 (52 aa)
MEDGLLIKVLLRNDSLIMLGGDENSVHTEGNHGTILIVVLDSDLSLTIGPQP*

Sequence

>CNT30571189
GCACCACTTCTGTCCACCTTGGTAGGGTCCTTGCCAGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCGTAAGTGTCAATGATGATTTTCCGTCCAG
TGAGACCAGCATCACCGTGAGGGCCACCAATGACAAAGCGGCCTGATGGGTTGAGATGGAAGATGGTCTTCTCATCAAGGTACTTCTCAGGAATGACAGT
CTCATCATGCTGGGTGGAGATGAGAACAGTGTGCACACGGAGGGGAACCATGGCACCATTCTCATTGTGGTACTCGACAGTGACTTGAGTCTTACCATCG
GGCCTCAGCCATGAACAGGTTCCATTCTTCCTAACCTCAGTGAGGCGGGCACCAAGCTTGGTAGCAAGAACATGGCTCAGAGGCATAAGTTCAGGGGTCT
CATCAGTGGCATAACCAAACATGTGGCCTTGGTCACCAGCACCAATTTCCTCTGGGCGCTTGGTAAGATGACCGTGAACACCCTGGGCAATATCAGGGCT
CTGCTGCTCAATGTTGACCAGGACTTTGCAGTTATCAGCATCAAGACCCACATCATCAGAGACAAATCCAATGGTGCGGCATGTGTCACGGACAATCTTC
TCATAGTCTATATCGG