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Detailed information on CNT30672380


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 2e-131

BLAST vs NONCODE:
NONPOPT000587, E-value = 4e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549537Setaria viridisIpomoea triloba55.5466.2281.86441forward
CNT30373104Setaria viridisArabidopsis thaliana61.8458.5281.06491forward
CNT30266729Setaria viridisChenopodium quinoa56.1734.683.63446forward
CNT30729630Setaria viridisCorchorus capsularis51.6450.0683.17410forward
CNT30381460Setaria viridisManihot esculenta59.1951.1485.11470forward
CNT30628391Setaria viridisVigna unguiculata70.1548.5682.23557forward
CNT30294498Setaria viridisTriticum aestivum54.6654.3288.25434forward
CNT30225924Setaria viridisHordeum vulgare55.9278.8685.14444forward
CNT30389985Setaria viridisTriticum turgidum59.1946.2187.87470forward
CNT30561874Setaria viridisActinidia chinensis52.6447.3985.89418forward
CNT30437887Setaria viridisAegilops tauschii47.9854.4387.66381forward
CNT30667060Setaria viridisTriticum dicoccoides47.7359.6985.22379forward
CNT30471290Setaria viridisSaccharum spontaneum94.8483.8593.49753forward
CNT30608385Setaria viridisGossypium raimondii5072.1884.89397forward
CNT30218287Setaria viridisKalanchoe fedtschenkoi38.0458.1983.11302forward
CNT30650282Setaria viridisRosa chinensis52.5235.486.09417forward
CNT30686785Setaria viridisTriticum urartu61.0848.0286.39485forward
CNT30597069Setaria viridisOryza meridionalis62.4724.7991.53496forward
CNT30432398Setaria viridisPapaver somniferum54.4135.5881.94432forward
CNT3055182Setaria viridisAmborella trichopoda53.1539.9281.99422forward
CNT3022562Setaria viridisPopulus trichocarpa61.3431.1484.19487forward
CNT30101941Setaria viridisOryza rufipogon54.6651.9891.94434forward
CNT30496713Setaria viridisDigitaria exilis57.1830.1593.83454forward
CNT30725315Setaria viridisLupinus angustifolius74.8159.0583594forward

Expression of CNT30672380

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 2 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 3 (70 aa)
MRSTDDKATRWVKVEDGLLVKVLLRDDRLDDMLLEVSGNLIVGDCLVVLGRDEDSNSTSDKNHSLPVPNRR

>peptide 4 (66 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTVILRVTRTIHYPFQTGG

>peptide 5 (43 aa)
PHKYHLLGQYNTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

Sequence

>CNT30672380
CCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGC
AGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGA
AGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTT
AATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGG
ACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGG
AGAAAGCACCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAA
GCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCA
TCGTTGGTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGTAATTCTACGAGTGACAAGAACCATTCACTACCCGTTCCAAACAGGCGGGT