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Detailed information on CNT30508545


BLAST search results

BLAST vs Swiss-Prot:
sp|A9PHC5|METK4_POPTR, E-value = 7e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672441Solanum lycopersicumSetaria viridis43.2423.183.24179forward
CNT30520870Solanum lycopersicumSetaria italica43.2426.3282.68179forward
CNT30639623Solanum lycopersicumNymphaea colorata28.2622.4685.47117forward
CNT30698521Solanum lycopersicumQuercus lobata43.2431.9184.36179forward
CNT30376698Solanum lycopersicumArabidopsis thaliana29.7118.5286.18123forward
CNT30266729Solanum lycopersicumChenopodium quinoa29.479.4686.07122forward
CNT3021108Solanum lycopersicumCitrullus lanatus43.2410.8784.36179forward
CNT30402638Solanum lycopersicumBeta vulgaris44.4414.3684.78184forward
CNT30194995Solanum lycopersicumPisum sativum24.410.6190.1101forward
CNT3047442Solanum lycopersicumPrunus dulcis39.6127.0684.15164forward
CNT3096210Solanum lycopersicumSolanum tuberosum36.9624.683.01153forward
CNT30181754Solanum lycopersicumSecale cereale43.2428.4683.24179forward
CNT30301451Solanum lycopersicumTriticum aestivum28.0232.486.21116forward
CNT30389985Solanum lycopersicumTriticum turgidum33.0913.4783.94137forward
CNT30144304Solanum lycopersicumMedicago truncatula28.7418.5189.08119forward
CNT30437887Solanum lycopersicumAegilops tauschii33.0919.5783.94137forward
CNT30471290Solanum lycopersicumSaccharum spontaneum28.0212.9287.07116forward
CNT3014998Solanum lycopersicumZea mays43.4832.4981.11180forward
CNT30608385Solanum lycopersicumGossypium raimondii44.6933.6485.95185forward
CNT30218287Solanum lycopersicumKalanchoe fedtschenkoi25.8520.6285.05107forward
CNT30624603Solanum lycopersicumDaucus carota25.1215.7687.5104forward
CNT30349162Solanum lycopersicumEragrostis tef27.2912.486.73113forward
CNT30477100Solanum lycopersicumArabidopsis halleri25.1226.3385.58104forward
CNT30368062Solanum lycopersicumSorghum bicolor28.0210.5686.21116forward
CNT30597069Solanum lycopersicumOryza meridionalis33.82786.43140forward
CNT30358838Solanum lycopersicumLactuca sativa28.7417.488.24119forward
CNT30429132Solanum lycopersicumPapaver somniferum28.747.586.55119forward
CNT30571189Solanum lycopersicumVitis vinifera22.2214.9489.1392forward
CNT3022562Solanum lycopersicumPopulus trichocarpa42.5111.2584.66176forward
CNT3035650Solanum lycopersicumCucumis melo43.2413.2886.03179forward
CNT30331991Solanum lycopersicumDioscorea rotundata29.4725.7985.25122forward
CNT30101941Solanum lycopersicumOryza rufipogon42.5121.0884.09176forward
CNT30496713Solanum lycopersicumDigitaria exilis33.829.383.57140forward
CNT30725315Solanum lycopersicumLupinus angustifolius44.6918.3984.86185forward

Expression of CNT30508545

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHLRASPLATILFAACLTMYAPLLSTLVGSLPEKAPPP*

Sequence

>CNT30508545
TTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAA
ACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGG
GCTTGACAACTTCCCATGTGAAATCGGGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAG
CCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGAT
GATGATTTTACGAC