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Detailed information on CNT3013982


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944U4|METK_DENCR, E-value = 4e-60

BLAST vs NONCODE:
NONPOPT000587, E-value = 7e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672945Zea maysSetaria viridis57.5934.2295.21167forward
CNT30641080Zea maysNymphaea colorata64.1420.7889.78186forward
CNT30549907Zea maysIpomoea triloba86.2146.5582.4250forward
CNT30515028Zea maysJuglans regia90.6930.9883.27263forward
CNT30373104Zea maysArabidopsis thaliana64.8322.4186.17188forward
CNT30618114Zea maysSesamum indicum63.7940.9381.62185forward
CNT30266730Zea maysChenopodium quinoa69.3117.9586.57201forward
CNT3021108Zea maysCitrullus lanatus85.1715.0185.02247forward
CNT30381524Zea maysManihot esculenta88.6231.0887.16257forward
CNT30402638Zea maysBeta vulgaris93.121.0887.04270forward
CNT30524807Zea maysPhaseolus vulgaris63.7920.9884.32185forward
CNT30628391Zea maysVigna unguiculata63.7916.1384.86185forward
CNT30712018Zea maysGlycine max80.6944.0785.47234forward
CNT3047443Zea maysPrunus dulcis78.2819.0386.34227forward
CNT30158121Zea maysPistacia vera26.2112.1694.7476forward
CNT30638840Zea maysCapsicum annuum57.9319.6786.31168forward
CNT3090332Zea maysSolanum tuberosum52.7623.5488.89153forward
CNT30190465Zea maysSecale cereale62.4162.8591.71181forward
CNT30225130Zea maysHordeum vulgare58.2840.0588.17169forward
CNT30389985Zea maysTriticum turgidum83.123.785.89241forward
CNT30561874Zea maysActinidia chinensis32.7610.7793.6895forward
CNT30508429Zea maysSolanum lycopersicum28.6233.685.5483forward
CNT30172560Zea maysTrifolium pratense67.2428.6382.56195forward
CNT30146819Zea maysMedicago truncatula57.5922.2483.83167forward
CNT30662024Zea maysTriticum dicoccoides67.9338.7883.76197forward
CNT3066706Zea maysLeersia perrieri44.8338.2487.69130forward
CNT30650534Zea maysRosa chinensis48.9715.2483.8142forward
CNT30626924Zea maysDaucus carota91.3821.0284.15265forward
CNT30349162Zea maysEragrostis tef85.8627.3393.17249forward
CNT30367875Zea maysSorghum bicolor77.2427.0996.88224forward
CNT30620815Zea maysCajanus cajan26.910.6788.4678forward
CNT30358838Zea maysLactuca sativa4016.9681.03116forward
CNT30420528Zea maysPapaver somniferum56.98.6681.82165forward
CNT30570759Zea maysVitis vinifera85.5244.1386.69248forward
CNT3055164Zea maysAmborella trichopoda88.6222.3584.05257forward
CNT3025883Zea maysPopulus trichocarpa78.2820.2183.7227forward
CNT3035650Zea maysCucumis melo88.6219.0783.66257forward
CNT30174546Zea maysVigna angularis86.5532.8182.87251forward
CNT30557997Zea maysPanicum hallii29.6617.4491.8686forward
CNT30113329Zea maysFicus carica58.6215.7888.82170forward
CNT30725315Zea maysLupinus angustifolius93.126.8484.44270forward

Expression of CNT3013982

Peptides detected in this lncRNA

>peptide 1 (95 aa)
PFQSGRRSTNDKAARWVKVEDGLLVKVLLRDDRLDDMLLQVSSDLIIGHCLVVLGGDEDGVDTDGDHGTTLIAVLDCHLGLPIRPEPGAGSVLADL

>peptide 2 (95 aa)
VPSKVAVGPPMTKRPDGLRWKMVFSSRYCSGMTGLMTCSFRSAAISSLVTVSSCWVEMRTVWTRMGTMAPPSLRYSTVTWVFPSGLSQGQVPFLRT

Sequence

>CNT3013982
GTCCCTTCCAAAGTGGCCGTAGGTCCACCAATGACAAAGCGGCCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGACAG
GCTTGATGACATGCTCCTTCAGGTCAGCAGCGATCTCATCATTGGTCACTGTCTCGTCGTGCTGGGTGGAGATGAGGACGGTGTGGACACGGATGGGGAC
CATGGCACCACCCTCATTGCGGTACTCGACTGTCACCTGGGTCTTCCCATCAGGCCTGAGCCAGGGGCAGGTTCCGTTCTTGCGGACCTC