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Detailed information on CNT30608385


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AT56|METK1_ELAUM, E-value = 6e-83

BLAST vs NONCODE:
NONATHT001922, E-value = 3e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672380Gossypium raimondiiSetaria viridis72.185084.89397forward
CNT30521359Gossypium raimondiiSetaria italica72.1860.2484.63397forward
CNT30639623Gossypium raimondiiNymphaea colorata33.6435.5185.41185forward
CNT30698521Gossypium raimondiiQuercus lobata46.5545.6386.72256forward
CNT30374620Gossypium raimondiiArabidopsis thaliana27.6417.5585.53152forward
CNT30618114Gossypium raimondiiSesamum indicum41.2750.2286.34227forward
CNT30266729Gossypium raimondiiChenopodium quinoa60.9125.9983.88335forward
CNT3021108Gossypium raimondiiCitrullus lanatus63.4521.284.53349forward
CNT30729048Gossypium raimondiiCorchorus capsularis56.7347.5691.03312forward
CNT30381460Gossypium raimondiiManihot esculenta65.0938.9687.43358forward
CNT30402638Gossypium raimondiiBeta vulgaris55.2723.7383.88304forward
CNT30524807Gossypium raimondiiPhaseolus vulgaris51.2731.9784.4282forward
CNT30628391Gossypium raimondiiVigna unguiculata71.8234.4483.54395forward
CNT30194995Gossypium raimondiiPisum sativum3218.4984.09176forward
CNT30708643Gossypium raimondiiGlycine max54.3653.8783.95299forward
CNT30158121Gossypium raimondiiPistacia vera3026.489.7165forward
CNT30181754Gossypium raimondiiSecale cereale47.2741.3485260forward
CNT30294498Gossypium raimondiiTriticum aestivum64.7344.5683.71356forward
CNT30225924Gossypium raimondiiHordeum vulgare70.7369.0981.75389forward
CNT30389985Gossypium raimondiiTriticum turgidum61.4533.2483.73338forward
CNT30561874Gossypium raimondiiActinidia chinensis72.7345.3586400forward
CNT30508545Gossypium raimondiiSolanum lycopersicum33.6444.6985.95185forward
CNT30172560Gossypium raimondiiTrifolium pratense40.5532.7584.3223forward
CNT30146819Gossypium raimondiiMedicago truncatula30.7322.588.76169forward
CNT30437887Gossypium raimondiiAegilops tauschii61.4548.2983.43338forward
CNT30667060Gossypium raimondiiTriticum dicoccoides69.4560.1681.15382forward
CNT30471290Gossypium raimondiiSaccharum spontaneum72.7344.5484.75400forward
CNT3014998Gossypium raimondiiZea mays2625.8185.31143forward
CNT30218287Gossypium raimondiiKalanchoe fedtschenkoi54.9158.1983.44302forward
CNT3066706Gossypium raimondiiLeersia perrieri3861.4780.38209forward
CNT30650282Gossypium raimondiiRosa chinensis63.6429.7189.71350forward
CNT30624603Gossypium raimondiiDaucus carota33.4527.8887.5184forward
CNT30686069Gossypium raimondiiTriticum urartu68.1844.0781.6375forward
CNT30349162Gossypium raimondiiEragrostis tef39.4523.8285.25217forward
CNT30368062Gossypium raimondiiSorghum bicolor70.3635.2185.01387forward
CNT30597069Gossypium raimondiiOryza meridionalis70.3619.3483.72387forward
CNT30358838Gossypium raimondiiLactuca sativa35.8228.883.25197forward
CNT30571189Gossypium raimondiiVitis vinifera30.7327.4489.35169forward
CNT3055182Gossypium raimondiiAmborella trichopoda72.7337.8480.5400forward
CNT3022562Gossypium raimondiiPopulus trichocarpa67.2723.6688.65370forward
CNT3035650Gossypium raimondiiCucumis melo57.8223.5983.33318forward
CNT30331991Gossypium raimondiiDioscorea rotundata37.0943.1385.29204forward
CNT30148817Gossypium raimondiiBrachypodium distachyon23.0910.9988.19127forward
CNT30101941Gossypium raimondiiOryza rufipogon63.6441.9282.86350forward
CNT30574675Gossypium raimondiiOryza barthii17.2721.0683.1695forward
CNT30496713Gossypium raimondiiDigitaria exilis67.4524.6382.21371forward
CNT30551132Gossypium raimondiiOryza brachyantha14.9121.2490.2482forward
CNT30113329Gossypium raimondiiFicus carica23.2711.8882.81128forward
CNT30725315Gossypium raimondiiLupinus angustifolius70.7338.6782.78389forward

Expression of CNT30608385

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGSPATISVNNDLTSGETCITMRTTDYKAARWVKVEDC

>peptide 2 (72 aa)
MDKQALRQAAGLNLRLGLVPLEGCLQEPTIATSLEVQVDGDHTRPKVEVLLHNLEYFLVRNLSGSVTVHEDR*

Sequence

>CNT30608385
ATTAGAAGCATTCCGGGGATGAAAATAGAGTATAGGTGAGCAGCAAGGCAATATTATTCAGTACTATGGATAAGCAGGCACTGAGACAGGCAGCAGGGCT
GAACTTAAGATTGGGGCTTGTCCCACTTGAGGGCTGTCTTCAAGAACCGACCATTGCCACCTCTCTTGAGGTCCAGGTTGATGGTGATCATACCAGGCCT
AAAGTCGAAGTTCTCCTTCACAATTTGGAGTATTTCCTTGTCAGGAATCTTTCCGGTTCCGTAACTGTCCACGAAGACAGATAAGGGCTCAGGCACACCA
ATAGCATAGGAGACTTGTACGATGCATCTGCGGGCAAGTCCGTTTGCTACAATGCTCTTGGCAGCCTGCCTAACAATGTAAGCACCACTCCTGTCCACCT
TGGTTGGGTCCTTTCCGGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCATAAGTGTCAATAATGATCTTACGTCCGGTGAGACCTGCATCACCATG
AGGACCACCGATTACAAAGCGGCCAGATGGGTTAAGGTGGAAGATTGTCT