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Detailed information on CNT3066706


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672906Leersia perrieriSetaria viridis61.7624.1986.19210forward
CNT30520870Leersia perrieriSetaria italica61.4730.7486.12209forward
CNT30641080Leersia perrieriNymphaea colorata37.6514.385.16128forward
CNT30549537Leersia perrieriIpomoea triloba61.4731.3882.78209forward
CNT30515028Leersia perrieriJuglans regia38.2415.3186.92130forward
CNT30698521Leersia perrieriQuercus lobata31.1818.8984.91106forward
CNT30373104Leersia perrieriArabidopsis thaliana37.9415.3883.72129forward
CNT30618114Leersia perrieriSesamum indicum38.2428.7684.62130forward
CNT30266729Leersia perrieriChenopodium quinoa61.4716.2185.17209forward
CNT3021108Leersia perrieriCitrullus lanatus34.717.1786.44118forward
CNT30729048Leersia perrieriCorchorus capsularis61.4731.8680.86209forward
CNT30381356Leersia perrieriManihot esculenta38.2444.6789.23130forward
CNT30402638Leersia perrieriBeta vulgaris39.1210.3886.47133forward
CNT30524807Leersia perrieriPhaseolus vulgaris39.1215.0884.96133forward
CNT30628391Leersia perrieriVigna unguiculata21.476.3690.4173forward
CNT30490001Leersia perrieriOlea europaea36.7625.284125forward
CNT30712018Leersia perrieriGlycine max37.9424.2986.05129forward
CNT3047443Leersia perrieriPrunus dulcis37.6510.7387.5128forward
CNT30638840Leersia perrieriCapsicum annuum38.2415.2286.15130forward
CNT3090332Leersia perrieriSolanum tuberosum38.242086.15130forward
CNT30190429Leersia perrieriSecale cereale46.4733.2688.61158forward
CNT30303722Leersia perrieriTriticum aestivum61.4734.4985.17209forward
CNT30225924Leersia perrieriHordeum vulgare61.4737.1284.69209forward
CNT30389985Leersia perrieriTriticum turgidum60.5920.2684.47206forward
CNT30561874Leersia perrieriActinidia chinensis61.4723.782.78209forward
CNT30508429Leersia perrieriSolanum lycopersicum24.4133.685.5483forward
CNT30172560Leersia perrieriTrifolium pratense38.2419.0986.15130forward
CNT30144304Leersia perrieriMedicago truncatula37.0619.685.71126forward
CNT30437887Leersia perrieriAegilops tauschii60.5929.4384.47206forward
CNT30667060Leersia perrieriTriticum dicoccoides61.4732.9186.12209forward
CNT30471290Leersia perrieriSaccharum spontaneum61.4723.2785.17209forward
CNT3013982Leersia perrieriZea mays38.2444.8387.69130forward
CNT30608385Leersia perrieriGossypium raimondii61.473880.38209forward
CNT30218287Leersia perrieriKalanchoe fedtschenkoi62.0640.6680.09211forward
CNT30650282Leersia perrieriRosa chinensis61.4717.7481.34209forward
CNT30624603Leersia perrieriDaucus carota39.1220.1585.71133forward
CNT30686961Leersia perrieriTriticum urartu52.9420.7687.22180forward
CNT30349162Leersia perrieriEragrostis tef37.6514.0590.62128forward
CNT30368062Leersia perrieriSorghum bicolor61.4719.0285.65209forward
CNT30620812Leersia perrieriCajanus cajan56.7615.5480.31193forward
CNT30597062Leersia perrieriOryza meridionalis61.471984.21209forward
CNT30432398Leersia perrieriPapaver somniferum61.4717.2279.43209forward
CNT30570759Leersia perrieriVitis vinifera37.6522.7886.72128forward
CNT3055164Leersia perrieriAmborella trichopoda39.1211.5786.47133forward
CNT3022500Leersia perrieriPopulus trichocarpa38.2419.490.77130forward
CNT3035650Leersia perrieriCucumis melo27.656.9786.1794forward
CNT30331991Leersia perrieriDioscorea rotundata4028.7584.56136forward
CNT30148817Leersia perrieriBrachypodium distachyon56.7616.781.87193forward
CNT30574675Leersia perrieriOryza barthii42.9432.3787.67146forward
CNT30496713Leersia perrieriDigitaria exilis61.4713.8885.17209forward
CNT30174546Leersia perrieriVigna angularis37.9416.8686.05129forward
CNT30113329Leersia perrieriFicus carica34.7110.9683.9118forward
CNT30725315Leersia perrieriLupinus angustifolius37.9412.8286.05129forward

Expression of CNT3066706

Peptides detected in this lncRNA

>peptide 1 (84 aa)
PEIEILLDNLEDFLVRNLAGAIGVDKHREGLRHTNGVRHLHNATASKASRDNALGSLPGNVGATAVHLGGRSSSHQGTSPGSPA*

Sequence

>CNT3066706
GGCCTGAAATCGAAATTCTCCTTGACAATCTTGAGGATTTCCTTGTCAGGAATCTTGCCGGTGCCATAGGAGTCGACAAACACAGAGAGGGGCTCCGGCA
CACCAATGGCGTACGACACCTGCACAATGCAACGGCGAGCAAGGCCAGCCGCGACAATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCGCCACTGCGGTC
CACCTTGGTGGAAGATCGTCTTCTCATCAAGGTACTTCTCCGGGATCACCGGCTTGATGACATGCTCCTTAAGATCAGCGGCGATCTCATCATTGGTGAC
AGTCTCATCATGCTGGGTAGAGATGAGCACAGTGTGAACG